myRT

myRT report for GCA_004170965.1_ASM417096v1

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Seq: SAEO01000041.1 (23696 bp)
Overview 1 RT 1: 3-4193 bp Neighborhood of RT #1 [3, 4207] DUF1281 RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 3-701 bp Feature: domain Description: DUF1281 Location: 72-600 bp Feature: domain Description: DUF1 281 Location: 72-600 bp Feature: gene Location: 778-2502 bp Feature: domain Description: RVT_N Location: 835-1072 bp Feature: domain Description: RVT_N Location: 835-1 072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 23-1 771 bp Feature: domain Description: YkfC Location: 1903-2059 bp Feature: domain Description: YkfC Location: 1 903-2059 bp Feature: domain Description: HNHc Note: nucleases Location: 2287-2446 bp Feature: domain Description: HNHc Note: nucleases Location: 2287-2446 bp Feature: gene Location: 3525-3773 bp Feature: domain Description: DinI Location: 3582-3762 bp Feature: domain Description: DinI Location: 3582-3762 bp Feature: gene Location: 3770-4207 bp Feature: domain Description: PRK10276 Location: 3827-4193 bp Feature: domain Description: PRK1 0276 Location: 3827-41 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: SAEO01000004.1 (263354 bp)
Overview 1 RT 1: 23728-27471 bp Neighborhood of RT #1 [23728, 27482] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23728-24210 bp Feature: domain Description: SmpB Location: 23758-24205 bp Feature: domain Description: SmpB Location: 2 3758-2 42 05 bp Feature: gene Location: 24344-24511 bp Feature: gene Location: 24896-25669 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25031-25484 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 5031-2 5484 bp Feature: gene Location: 26073-26291 bp Feature: domain Description: PRK09678 Location: 26076-26274 bp Feature: domain Description: PRK09678 Location: 2 6076-2 62 74 bp Feature: gene Location: 26382-27482 bp Feature: domain Description: D Location: 26388-27471 bp Feature: domain Description: D Location: 2 6388-2 7471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)