myRT

myRT report for GCA_004187715.1_ASM418771v1

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Seq: QZWF01000004.1 (617600 bp)
Overview 1 RT 1: 312924-324415 bp Neighborhood of RT #1 [312924, 324492] DDE_Tnp_1 DDE_5 RVT-GII GIIM RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core Inhibitor_I36 Feature: gene Location: 312924-313592 bp Feature: domain Description: DDE_Tnp_1 Location: 312939-313467 bp Feature: domain Description: DDE_Tnp_1 Location: 31 2939-31 3467 bp Feature: gene Location: 313695-315164 bp Feature: domain Description: DDE_5 Location: 313782-314574 bp Feature: domain Description: DDE_5 Location: 31 3782-31 4574 bp Feature: gene Location: 315339-316658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315594-316227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 5594-31 6227 bp Feature: domain Description: GIIM Note: maturase Location: 316311-316524 bp Feature: domain Description: GIIM Note: maturase Location: 31 631 1 -31 6524 bp Feature: gene Location: 317917-323454 bp Feature: domain Description: RHS_repeat Location: 319168-319276 bp Feature: domain Description: RHS_repeat Location: 31 91 68-31 9276 bp Feature: domain Description: RHS_repeat Location: 319363-319447 bp Feature: domain Description: RHS_repeat Location: 31 9363-31 9447 bp Feature: domain Description: RHS_repeat Location: 319477-319543 bp Feature: domain Description: RHS_repeat Location: 31 9477-31 9543 bp Feature: domain Description: RHS_repeat Location: 319732-319831 bp Feature: domain Description: RHS_repeat Location: 31 9732-31 9831 bp Feature: domain Description: RHS_repeat Location: 319861-319963 bp Feature: domain Description: RHS_repeat Location: 31 9861 -31 9963 bp Feature: domain Description: RHS_repeat Location: 319981-320089 bp Feature: domain Description: RHS_repeat Location: 31 9981 -320089 bp Feature: domain Description: RHS_repeat Location: 320197-320296 bp Feature: domain Description: RHS_repeat Location: 3201 97-320296 bp Feature: domain Description: RHS_repeat Location: 320323-320431 bp Feature: domain Description: RHS_repeat Location: 320323-320431 bp Feature: domain Description: RHS_repeat Location: 320476-320575 bp Feature: domain Description: RHS_repeat Location: 320476-320575 bp Feature: domain Description: RHS_repeat Location: 320602-320707 bp Feature: domain Description: RHS_repeat Location: 320602-320707 bp Feature: domain Description: RHS_repeat Location: 320728-320836 bp Feature: domain Description: RHS_repeat Location: 320728-320836 bp Feature: domain Description: RHS_repeat Location: 320944-321049 bp Feature: domain Description: RHS_repeat Location: 320944-321 049 bp Feature: domain Description: RHS_repeat Location: 321133-321235 bp Feature: domain Description: RHS_repeat Location: 321 1 33-321 235 bp Feature: domain Description: RHS_repeat Location: 321262-321343 bp Feature: domain Description: RHS_repeat Location: 321 262-321 343 bp Feature: domain Description: RHS_repeat Location: 321454-321550 bp Feature: domain Description: RHS_repeat Location: 321 454-321 550 bp Feature: domain Description: RHS_repeat Location: 321574-321679 bp Feature: domain Description: RHS_repeat Location: 321 574-321 679 bp Feature: domain Description: RHS_repeat Location: 321703-321790 bp Feature: domain Description: RHS_repeat Location: 321 703-321 790 bp Feature: domain Description: RHS_repeat Location: 321853-321961 bp Feature: domain Description: RHS_repeat Location: 321 853-321 961 bp Feature: domain Description: RHS_repeat Location: 321976-322057 bp Feature: domain Description: RHS_repeat Location: 321 976-322057 bp Feature: domain Description: Rhs_assc_core Location: 322345-322594 bp Feature: domain Description: Rhs_assc_core Location: 322345-322594 bp Feature: gene Location: 324085-324492 bp Feature: domain Description: Inhibitor_I36 Location: 324223-324415 bp Feature: domain Description: Inhibitor_I36 Location: 324223-32441 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QZWF01000024.1 (70899 bp)
Overview 1 RT 1: 56114-60716 bp Neighborhood of RT #1 [56114, 60787] RVT-GII GIIM RVT-GII HTH_31 MLTR_LBD AraJ AraJ Feature: gene Location: 56114-56923 bp Feature: gene Location: 57048-57182 bp Feature: gene Location: 57342-58283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57363-57867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57363-57867 bp Feature: domain Description: GIIM Note: maturase Location: 57945-58170 bp Feature: domain Description: GIIM Note: maturase Location: 57945-58170 bp Feature: gene Location: 58367-58561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58490-58556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58490-58556 bp Feature: gene Location: 59331-60317 bp Feature: domain Description: HTH_31 Location: 59574-59814 bp Feature: domain Description: HTH_31 Location: 59574-59814 bp Feature: domain Description: MLTR_LBD Location: 59883-60300 bp Feature: domain Description: MLTR_LBD Location: 59883-60300 bp Feature: gene Location: 60335-60787 bp Feature: domain Description: AraJ Location: 60338-60521 bp Feature: domain Description: AraJ Location: 60338-6052 1 bp Feature: domain Description: AraJ Location: 60524-60716 bp Feature: domain Description: AraJ Location: 6052 4-60716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QZWF01000133.1 (2781 bp)
Overview 1 RT 1: 266-2631 bp Neighborhood of RT #1 [266, 2705] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 266-466 bp Feature: gene Location: 515-664 bp Feature: gene Location: 1056-2705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143 -193 8 bp Feature: domain Description: Intron_maturas2 Location: 2058-2274 bp Feature: domain Description: Intron_maturas2 Location: 2058-2274 bp Feature: domain Description: HNHc Note: nucleases Location: 2439-2631 bp Feature: domain Description: HNHc Note: nucleases Location: 243 9-263 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QZWF01000056.1 (12858 bp)
Overview 1 RT 1: 9500-12419 bp Neighborhood of RT #1 [9500, 12493] COG3293 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9500-9862 bp Feature: gene Location: 9996-10493 bp Feature: domain Description: COG3293 Location: 10083-10461 bp Feature: domain Description: COG3293 Location: 10083-104 61 bp Feature: gene Location: 10667-12493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10928-11729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10928-11729 bp Feature: domain Description: Intron_maturas2 Location: 11846-12062 bp Feature: domain Description: Intron_maturas2 Location: 1184 6-12062 bp Feature: domain Description: HNHc Note: nucleases Location: 12257-12419 bp Feature: domain Description: HNHc Note: nucleases Location: 12257-124 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QZWF01000008.1 (303459 bp)
Overview 1 RT 1: 215704-221801 bp Neighborhood of RT #1 [215704, 221947] DDE_Tnp_1 RVT-GII GIIM Rv1155_F420 COG5659 Feature: gene Location: 215704-216144 bp Feature: gene Location: 216671-217024 bp Feature: domain Description: DDE_Tnp_1 Location: 216686-216950 bp Feature: domain Description: DDE_Tnp_1 Location: 216686-21695 0 bp Feature: gene Location: 217543-218961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217864-218545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217864-2185 45 bp Feature: domain Description: GIIM Note: maturase Location: 218623-218848 bp Feature: domain Description: GIIM Note: maturase Location: 218623-218848 bp Feature: gene Location: 220068-220529 bp Feature: domain Description: Rv1155_F420 Location: 220146-220461 bp Feature: domain Description: Rv115 5 _F420 Location: 220146-220461 bp Feature: gene Location: 220664-221947 bp Feature: domain Description: COG5659 Location: 220697-221801 bp Feature: domain Description: COG5 65 9 Location: 220697-221801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QZWF01000002.1 (1199020 bp)
Overview 1 RT 1: 639097-643869 bp 2 RT 2: 711348-716897 bp 3 RT 3: 1002671-1010466 bp Neighborhood of RT #1 [639097, 643976] HTH_Tnp_4 DDE_Tnp_4 AAA_33 RVT-GII GIIM HTH_23 HTH_33 DDE_3 Neighborhood of RT #2 [711348, 716897] tspaseT_teng_C RVT-GII GIIM HNH SpoIIE Neighborhood of RT #3 [1002671, 1010600] COG3464 RVT-GII GIIM RVT-GII GIIM COG3464 DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 639097-639789 bp Feature: domain Description: HTH_Tnp_4 Location: 639133-639286 bp Feature: domain Description: HTH_Tnp_4 Location: 6 39133-6 39286 bp Feature: domain Description: DDE_Tnp_4 Location: 639334-639772 bp Feature: domain Description: DDE_Tnp_4 Location: 6 39334-6 39772 bp Feature: gene Location: 639931-640542 bp Feature: domain Description: AAA_33 Location: 640006-640399 bp Feature: domain Description: AAA_33 Location: 6 40006 -6 40399 bp Feature: gene Location: 641241-642560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641496-642129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 41496 -6 42129 bp Feature: domain Description: GIIM Note: maturase Location: 642213-642423 bp Feature: domain Description: GIIM Note: maturase Location: 6 42213-6 42423 bp Feature: gene Location: 642913-643452 bp Feature: domain Description: HTH_23 Location: 642961-643105 bp Feature: domain Description: HTH_23 Location: 6 4296 1-6 43105 bp Feature: domain Description: HTH_33 Location: 643204-643375 bp Feature: domain Description: HTH_33 Location: 6 43204-6 43375 bp Feature: gene Location: 643545-643976 bp Feature: domain Description: DDE_3 Location: 643647-643869 bp Feature: domain Description: DDE_3 Location: 6 436 47-6 4386 9 bp Feature: gene Location: 711348-711818 bp Feature: gene Location: 711910-712317 bp Feature: domain Description: tspaseT_teng_C Location: 712054-712261 bp Feature: domain Description: tspaseT_teng_C Location: 712054-71226 1 bp Feature: gene Location: 713340-714707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713343-713940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713343-713940 bp Feature: domain Description: GIIM Note: maturase Location: 713991-714225 bp Feature: domain Description: GIIM Note: maturase Location: 713991-714225 bp Feature: domain Description: HNH Note: nucleases Location: 714552-714651 bp Feature: domain Description: HNH Note: nucleases Location: 714552-7146 51 bp Feature: gene Location: 714616-716184 bp Feature: domain Description: SpoIIE Location: 715573-716152 bp Feature: domain Description: SpoIIE Location: 715573-716 152 bp Feature: gene Location: 716667-716897 bp Feature: gene Location: 1002671-1003297 bp Feature: domain Description: COG3464 Location: 1002944-1003292 bp Feature: domain Description: COG346 4 Location: 1002944-1003292 bp Feature: gene Location: 1003310-1003525 bp Feature: gene Location: 1003647-1005116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003983-1004667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003983-10046 6 7 bp Feature: domain Description: GIIM Note: maturase Location: 1004736-1004949 bp Feature: domain Description: GIIM Note: maturase Location: 1004736 -1004949 bp Feature: gene Location: 1005816-1007234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006137-1006818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006 137-1006 818 bp Feature: domain Description: GIIM Note: maturase Location: 1006896-1007121 bp Feature: domain Description: GIIM Note: maturase Location: 1006 896 -1007121 bp Feature: gene Location: 1007812-1008585 bp Feature: domain Description: COG3464 Location: 1007929-1008577 bp Feature: domain Description: COG346 4 Location: 1007929-1008577 bp Feature: gene Location: 1009338-1010600 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1009428-1009893 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1009428-1009893 bp Feature: domain Description: Transposase_20 Location: 1010217-1010466 bp Feature: domain Description: Transposase_20 Location: 1010217-101046 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT