myRT

myRT report for GCA_004193595.1_ASM419359v1

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Seq: RPGQ01000041.1 (10197 bp)
Overview 1 RT 1: 1184-5032 bp Neighborhood of RT #1 [1184, 5064] UPF0547 RVT-GII HTH_45 Feature: gene Location: 1184-2113 bp Feature: domain Description: UPF0547 Location: 1190-1250 bp Feature: domain Description: UPF0547 Location: 1 1 90-1 250 bp Feature: gene Location: 2354-2671 bp Feature: gene Location: 2709-4187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3171-3840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 71 -3840 bp Feature: gene Location: 4277-4426 bp Feature: gene Location: 4429-5064 bp Feature: domain Description: HTH_45 Location: 4912-5032 bp Feature: domain Description: HTH_45 Location: 491 2-5032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0547 (pfam10571), RVT-GII, HTH_45 (pfam14947)

Seq: RPGQ01000005.1 (163734 bp)
Overview 1 RT 1: 152286-155892 bp Neighborhood of RT #1 [152286, 155912] TIGR02436 PRK06855 RVT-GII GIIM GlpC Feature: gene Location: 152286-152651 bp Feature: domain Description: TIGR02436 Location: 152319-152634 bp Feature: domain Description: TIGR02 436 Location: 152 319-152 634 bp Feature: gene Location: 152861-153076 bp Feature: domain Description: PRK06855 Location: 152864-153065 bp Feature: domain Description: PRK06855 Location: 152 864-153065 bp Feature: gene Location: 153355-154635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153658-154282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153658-1542 82 bp Feature: domain Description: GIIM Note: maturase Location: 154366-154582 bp Feature: domain Description: GIIM Note: maturase Location: 154366-154582 bp Feature: gene Location: 154783-155100 bp Feature: gene Location: 155466-155912 bp Feature: domain Description: GlpC Location: 155484-155892 bp Feature: domain Description: GlpC Location: 155484-155892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02436 (four helix bundle protein), PRK06855 (pyridoxal phosphate-dependent aminotransferase), RVT-GII, GIIM (pfam08388), GlpC (COG0247)

Seq: RPGQ01000001.1 (362177 bp)
Overview 1 RT 1: 148752-152354 bp 2 RT 2: 242610-245421 bp Neighborhood of RT #1 [148752, 152354] RVT-GII GIIM Neighborhood of RT #2 [242610, 245426] Cytidylate_kin2 AtoC CBS CBS RVT-GII COG2929 Feature: gene Location: 148752-149144 bp Feature: gene Location: 149717-150091 bp Feature: gene Location: 150243-151682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150249-150816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150249-150816 bp Feature: domain Description: GIIM Note: maturase Location: 150870-151083 bp Feature: domain Description: GIIM Note: maturase Location: 150870-151083 bp Feature: gene Location: 151823-152023 bp Feature: gene Location: 152187-152354 bp Feature: gene Location: 242610-243221 bp Feature: domain Description: Cytidylate_kin2 Location: 242619-243171 bp Feature: domain Description: Cytidylate_kin2 Location: 242619-243 171 bp Feature: gene Location: 243258-244160 bp Feature: domain Description: AtoC Location: 243276-243711 bp Feature: domain Description: AtoC Location: 243 276-243 711 bp Feature: domain Description: CBS Location: 243741-243876 bp Feature: domain Description: CBS Location: 243 741-243 876 bp Feature: domain Description: CBS Location: 243975-244134 bp Feature: domain Description: CBS Location: 243 975-24413 4 bp Feature: gene Location: 244572-244832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244575-244674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244575-244674 bp Feature: gene Location: 244940-245164 bp Feature: gene Location: 245148-245426 bp Feature: domain Description: COG2929 Location: 245160-245421 bp Feature: domain Description: COG2929 Location: 245160-245421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cytidylate_kin2 (pfam13189), AtoC (COG2204), CBS (smart00116), COG2929 (Uncharacterized conserved protein, DUF497 family )

Seq: RPGQ01000028.1 (56978 bp)
Overview 1 RT 1: 5234-7802 bp Neighborhood of RT #1 [5234, 7802] RVT-GII GIIM Feature: gene Location: 5234-5434 bp Feature: gene Location: 5714-5851 bp Feature: gene Location: 6040-7296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6319-6943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6319-694 3 bp Feature: domain Description: GIIM Note: maturase Location: 7030-7240 bp Feature: domain Description: GIIM Note: maturase Location: 7030-724 0 bp Feature: gene Location: 7411-7539 bp Feature: gene Location: 7551-7802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RPGQ01000002.1 (311891 bp)
Overview 1 RT 1: 13966-17153 bp Neighborhood of RT #1 [13966, 17153] CarboxypepD_reg CarboxypepD_reg CarboxypepD_reg RVT-UG4 Feature: gene Location: 13966-14109 bp Feature: gene Location: 14141-15019 bp Feature: domain Description: CarboxypepD_reg Location: 14363-14495 bp Feature: domain Description: CarboxypepD_reg Location: 14363-14495 bp Feature: domain Description: CarboxypepD_reg Location: 14510-14624 bp Feature: domain Description: CarboxypepD_reg Location: 145 10-14624 bp Feature: domain Description: CarboxypepD_reg Location: 14759-14870 bp Feature: domain Description: CarboxypepD_reg Location: 1475 9-14870 bp Feature: gene Location: 15155-16102 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15503-15953 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15 5 03-15 95 3 bp Feature: gene Location: 16155-16358 bp Feature: gene Location: 16581-17153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CarboxypepD_reg (pfam13620), RVT-UG4

Seq: RPGQ01000058.1 (54819 bp)
Overview 1 RT 1: 41797-45854 bp Neighborhood of RT #1 [41797, 45883] Acetyltransf_10 RAYT RVT-GII COG3177 Feature: gene Location: 41797-42267 bp Feature: domain Description: Acetyltransf_10 Location: 41857-42166 bp Feature: domain Description: Acetyltransf_10 Location: 41857-4216 6 bp Feature: gene Location: 42287-42571 bp Feature: domain Description: RAYT Location: 42290-42521 bp Feature: domain Description: RAYT Location: 42290-42521 bp Feature: gene Location: 42699-44060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42978-43668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42978-436 6 8 bp Feature: gene Location: 44050-44559 bp Feature: gene Location: 44762-45883 bp Feature: domain Description: COG3177 Location: 44768-45854 bp Feature: domain Description: COG3177 Location: 4476 8-45854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RAYT (COG1943), RVT-GII, COG3177 (Fic family protein )

Seq: RPGQ01000074.1 (1126 bp)
Overview 1 RT 1: 3-843 bp Neighborhood of RT #1 [3, 947] RVT-GII GIIM Feature: gene Location: 3-947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-57 6 bp Feature: domain Description: GIIM Note: maturase Location: 630-843 bp Feature: domain Description: GIIM Note: maturase Location: 630-843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)