myRT

myRT report for GCA_004195145.1_ASM419514v1

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Seq: SGBT01000001.1 (3654592 bp)
Overview 1 RT 1: 1196385-1199793 bp 2 RT 2: 1845943-1852796 bp 3 RT 3: 2937161-2941739 bp Neighborhood of RT #1 [1196385, 1199793] DUF2188 RVT_N RVT-GII YkfC HNH Neighborhood of RT #2 [1845943, 1852796] PRK01202 PRK05367 RVT_N RVT-GII GIIM Neighborhood of RT #3 [2937161, 2941822] PRK09272 RVT_N RVT-GII GIIM DUF3800 helD PRK06319 Feature: gene Location: 1196385-1196738 bp Feature: gene Location: 1196814-1197041 bp Feature: domain Description: DUF2188 Location: 1196829-1197006 bp Feature: domain Description: DUF21 88 Location: 1 1 96829-1 1 97006 bp Feature: gene Location: 1197135-1198793 bp Feature: domain Description: RVT_N Location: 1197192-1197423 bp Feature: domain Description: RVT_N Location: 1 1 971 92-1 1 97423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197480-1198125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 97480-1 1 981 25 bp Feature: domain Description: YkfC Location: 1198257-1198437 bp Feature: domain Description: YkfC Location: 1 1 98257-1 1 98437 bp Feature: domain Description: HNH Note: nucleases Location: 1198650-1198782 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 98650-1 1 98782 bp Feature: gene Location: 1198877-1199299 bp Feature: gene Location: 1199608-1199793 bp Feature: gene Location: 1845943-1846332 bp Feature: domain Description: PRK01202 Location: 1845946-1846324 bp Feature: domain Description: PRK01 202 Location: 1 845946-1 846324 bp Feature: gene Location: 1846532-1849423 bp Feature: domain Description: PRK05367 Location: 1846556-1849415 bp Feature: domain Description: PRK05367 Location: 1 846556-1 84941 5 bp Feature: gene Location: 1849674-1851164 bp Feature: domain Description: RVT_N Location: 1849722-1849965 bp Feature: domain Description: RVT_N Location: 1 849722-1 849965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850010-1850637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85001 0-1 850637 bp Feature: domain Description: GIIM Note: maturase Location: 1850697-1850922 bp Feature: domain Description: GIIM Note: maturase Location: 1 850697-1 850922 bp Feature: gene Location: 1851142-1851309 bp Feature: gene Location: 1852389-1852796 bp Feature: gene Location: 2937161-2937514 bp Feature: domain Description: PRK09272 Location: 2937170-2937488 bp Feature: domain Description: PRK09272 Location: 29371 70-2937488 bp Feature: gene Location: 2938011-2938178 bp Feature: gene Location: 2938156-2939640 bp Feature: domain Description: RVT_N Location: 2938204-2938447 bp Feature: domain Description: RVT_N Location: 2938204-2938447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2938492-2939119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2938492-29391 1 9 bp Feature: domain Description: GIIM Note: maturase Location: 2939179-2939404 bp Feature: domain Description: GIIM Note: maturase Location: 29391 79-2939404 bp Feature: gene Location: 2940021-2941187 bp Feature: domain Description: DUF3800 Location: 2940057-2940990 bp Feature: domain Description: DUF3800 Location: 2940057-2940990 bp Feature: gene Location: 2941202-2941822 bp Feature: domain Description: helD Location: 2941208-2941409 bp Feature: domain Description: helD Location: 2941 208-2941 409 bp Feature: domain Description: PRK06319 Location: 2941466-2941739 bp Feature: domain Description: PRK0631 9 Location: 2941 466-2941 739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PRK01202 (glycine cleavage system protein GcvH), PRK05367 (aminomethyl-transferring glycine dehydrogenase), GIIM (pfam08388), PRK09272 (hypothetical protein; Provisional), DUF3800 (pfam12686)
helD (PRK11054), PRK06319 (DNA topoisomerase I/SWI domain fusion protein; Validated)

Seq: SGBT01000002.1 (884924 bp)
Overview 1 RT 1: 149061-152940 bp 2 RT 2: 276439-280931 bp 3 RT 3: 650410-658098 bp Neighborhood of RT #1 [149061, 152940] YfcC RVT_N RVT-GII GIIM Neighborhood of RT #2 [276439, 280957] PRK13755 RVT_N RVT-GII GIIM CAD3 GbsR Neighborhood of RT #3 [650410, 658196] HNHc PRK03564 RVT-UG1 DUF4145 SLR PRK05590 viperin Feature: gene Location: 149061-150467 bp Feature: domain Description: YfcC Location: 149073-150432 bp Feature: domain Description: YfcC Location: 149073-150432 bp Feature: gene Location: 150553-150705 bp Feature: gene Location: 150721-152211 bp Feature: domain Description: RVT_N Location: 150769-151012 bp Feature: domain Description: RVT_N Location: 150769-151012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151057-151684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151057-151684 bp Feature: domain Description: GIIM Note: maturase Location: 151744-151969 bp Feature: domain Description: GIIM Note: maturase Location: 151744-151969 bp Feature: gene Location: 152189-152356 bp Feature: gene Location: 152722-152940 bp Feature: gene Location: 276439-276840 bp Feature: domain Description: PRK13755 Location: 276451-276766 bp Feature: domain Description: PRK13755 Location: 2 76451-2 76766 bp Feature: gene Location: 277294-277461 bp Feature: gene Location: 277439-278929 bp Feature: domain Description: RVT_N Location: 277487-277730 bp Feature: domain Description: RVT_N Location: 2 77487-2 77730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277775-278402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 77775-2 78402 bp Feature: domain Description: GIIM Note: maturase Location: 278462-278687 bp Feature: domain Description: GIIM Note: maturase Location: 2 78462 -2 78687 bp Feature: gene Location: 279139-280149 bp Feature: domain Description: CAD3 Location: 279142-280144 bp Feature: domain Description: CAD3 Location: 2 79142 -2 80144 bp Feature: gene Location: 280400-280957 bp Feature: domain Description: GbsR Location: 280403-280931 bp Feature: domain Description: GbsR Location: 2 80403-2 80931 bp Feature: gene Location: 650410-651177 bp Feature: domain Description: HNHc Note: nucleases Location: 650998-651169 bp Feature: domain Description: HNHc Note: nucleases Location: 650998-651169 bp Feature: gene Location: 651344-651796 bp Feature: domain Description: PRK03564 Location: 651587-651791 bp Feature: domain Description: PRK03564 Location: 651587-651791 bp Feature: gene Location: 651793-655470 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 652414-652909 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 652 414-652 909 bp Feature: gene Location: 655924-657231 bp Feature: domain Description: DUF4145 Location: 655996-656236 bp Feature: domain Description: DUF4145 Location: 655996-6562 36 bp Feature: domain Description: SLR Location: 656704-657055 bp Feature: domain Description: SLR Location: 656704-657055 bp Feature: domain Description: PRK05590 Location: 657139-657229 bp Feature: domain Description: PRK05590 Location: 657139-6572 2 9 bp Feature: gene Location: 657228-658196 bp Feature: domain Description: viperin Location: 657252-658098 bp Feature: domain Description: viperin Location: 6572 52 -658098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfcC (COG1288), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13755 (organomercurial transporter MerC), CAD3 (cd08297), GbsR (COG1510), HNHc (smart00507), PRK03564 (formate dehydrogenase accessory protein FdhE; Provisional), RVT-UG1
DUF4145 (pfam13643), SLR (sd00010), PRK05590 (hypothetical protein; Provisional), viperin (TIGR04278)