myRT

myRT report for GCA_004195345.1_ASM419534v1

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Seq: SDWM01000083.1 (5694 bp)
Overview 1 RT 1: 2247-4792 bp Neighborhood of RT #1 [2247, 5586] RVT-GII Feature: gene Location: 2247-2450 bp Feature: gene Location: 2564-2896 bp Feature: gene Location: 3772-5586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093-4792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093-4792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SDWM01000143.1 (49668 bp)
Overview 1 RT 1: 44874-49573 bp Neighborhood of RT #1 [44874, 49665] HEPN_Apea GIIM RVT_N RVT-GII RVT_N RVT-GII GIIM Feature: gene Location: 44874-45911 bp Feature: domain Description: HEPN_Apea Location: 45480-45741 bp Feature: domain Description: HEPN_Apea Location: 45480-45741 bp Feature: gene Location: 46296-46724 bp Feature: domain Description: GIIM Note: maturase Location: 46308-46521 bp Feature: domain Description: GIIM Note: maturase Location: 46308-4652 1 bp Feature: gene Location: 46753-47811 bp Feature: domain Description: RVT_N Location: 46807-47050 bp Feature: domain Description: RVT_N Location: 46807-47050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47107-47767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47107-47767 bp Feature: gene Location: 48427-49665 bp Feature: domain Description: RVT_N Location: 48430-48646 bp Feature: domain Description: RVT_N Location: 48430-48646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48694-49348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48694-49348 bp Feature: domain Description: GIIM Note: maturase Location: 49399-49573 bp Feature: domain Description: GIIM Note: maturase Location: 49399-49573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Apea (pfam18739), GIIM (pfam08388), RVT_N (pfam13655), RVT-GII

Seq: SDWM01000113.1 (8282 bp)
Overview 1 RT 1: 4-3157 bp Neighborhood of RT #1 [4, 3157] RVT_N RVT-GII GIIM Feature: gene Location: 4-1458 bp Feature: domain Description: RVT_N Location: 67-307 bp Feature: domain Description: RVT_N Location: 67-3 07 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 55-1009 bp Feature: domain Description: GIIM Note: maturase Location: 1060-1294 bp Feature: domain Description: GIIM Note: maturase Location: 1060-1294 bp Feature: gene Location: 1993-2187 bp Feature: gene Location: 2249-3157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SDWM01000115.1 (7829 bp)
Overview 1 RT 1: 668-7298 bp Neighborhood of RT #1 [668, 7318] rve_2 RVT_N RVT-GII GIIM PHA02517 GDE_N GDE_C Feature: gene Location: 668-1483 bp Feature: gene Location: 1780-2019 bp Feature: domain Description: rve_2 Location: 1849-2011 bp Feature: domain Description: rve_2 Location: 184 9-2011 bp Feature: gene Location: 2132-3622 bp Feature: domain Description: RVT_N Location: 2204-2444 bp Feature: domain Description: RVT_N Location: 2204 -24 4 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492-3152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 92-3152 bp Feature: domain Description: GIIM Note: maturase Location: 3203-3440 bp Feature: domain Description: GIIM Note: maturase Location: 3203-34 4 0 bp Feature: gene Location: 4154-5227 bp Feature: domain Description: PHA02517 Location: 4664-5207 bp Feature: domain Description: PHA02517 Location: 4 664 -5207 bp Feature: gene Location: 5432-7318 bp Feature: domain Description: GDE_N Location: 5456-6080 bp Feature: domain Description: GDE_N Location: 54 56-6080 bp Feature: domain Description: GDE_C Location: 6221-7298 bp Feature: domain Description: GDE_C Location: 6221-7298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), GDE_N (pfam12439), GDE_C (pfam06202)

Seq: SDWM01000050.1 (10141 bp)
Overview 1 RT 1: 6962-9714 bp Neighborhood of RT #1 [6962, 9779] Endonuclea_NS_2 LTD RVT-GII GIIM Feature: gene Location: 6962-7918 bp Feature: domain Description: Endonuclea_NS_2 Location: 7316-7454 bp Feature: domain Description: Endonuclea_NS_2 Location: 7316-745 4 bp Feature: domain Description: LTD Location: 7616-7910 bp Feature: domain Description: LTD Location: 7616-7910 bp Feature: gene Location: 8087-8227 bp Feature: gene Location: 8487-9779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8787-9423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8787-9423 bp Feature: domain Description: GIIM Note: maturase Location: 9507-9714 bp Feature: domain Description: GIIM Note: maturase Location: 95 07-9714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Endonuclea_NS_2 (pfam13930), LTD (pfam00932), RVT-GII, GIIM (pfam08388)

Seq: SDWM01000166.1 (69473 bp)
Overview 1 RT 1: 5706-15538 bp Neighborhood of RT #1 [5706, 15543] GDEase CtpA RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII GIIM YcgR_2 PilZ TIGR00007 Feature: gene Location: 5706-6953 bp Feature: domain Description: GDEase Location: 5724-6933 bp Feature: domain Description: GDEase Location: 5724-6 933 bp Feature: gene Location: 7067-8338 bp Feature: domain Description: CtpA Location: 7226-8327 bp Feature: domain Description: CtpA Location: 7226 -8327 bp Feature: gene Location: 8928-9512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9129-9507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9129-9507 bp Feature: gene Location: 9624-10634 bp Feature: domain Description: Phage_int_SAM_1 Location: 9666-9909 bp Feature: domain Description: Phage_int_SAM_1 Location: 96 6 6 -9909 bp Feature: domain Description: INT_RitC_C_like Location: 10002-10557 bp Feature: domain Description: INT_RitC_C_like Location: 10002-10557 bp Feature: gene Location: 10621-11610 bp Feature: domain Description: INT_RitB_C_like Location: 10960-11542 bp Feature: domain Description: INT_RitB_C_like Location: 1096 0-11542 bp Feature: gene Location: 11603-12835 bp Feature: domain Description: xerS Location: 11930-12092 bp Feature: domain Description: xerS Location: 11930-12092 bp Feature: domain Description: INT_RitA_C_like Location: 12272-12803 bp Feature: domain Description: INT_RitA_C_like Location: 12272-12803 bp Feature: gene Location: 13000-13701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13003-13216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13003-13216 bp Feature: domain Description: GIIM Note: maturase Location: 13276-13486 bp Feature: domain Description: GIIM Note: maturase Location: 13276 -13486 bp Feature: gene Location: 13808-14848 bp Feature: domain Description: YcgR_2 Location: 13835-14099 bp Feature: domain Description: YcgR_2 Location: 13835-14099 bp Feature: domain Description: PilZ Location: 14132-14435 bp Feature: domain Description: PilZ Location: 14132-14435 bp Feature: gene Location: 14857-15543 bp Feature: domain Description: TIGR00007 Location: 14869-15538 bp Feature: domain Description: TIGR00007 Location: 1486 9-15538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDEase (cd01303), CtpA (COG0793), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitA_C_like (cd01188), GIIM (pfam08388), YcgR_2 (pfam12945)
PilZ (pfam07238), TIGR00007 (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase)