myRT

myRT report for GCA_004197395.1_ASM419739v1

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Seq: SELS01000146.1 (5965 bp)
Overview 1 RT 1: 2988-5031 bp Neighborhood of RT #1 [2988, 5819] RVT-UG7 Feature: gene Location: 2988-3899 bp Feature: gene Location: 3939-4232 bp Feature: gene Location: 4248-5819 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4620-5031 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4620-5031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: SELS01000182.1 (3501 bp)
Overview 1 RT 1: 287-2546 bp Neighborhood of RT #1 [287, 3100] RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 287-682 bp Feature: gene Location: 763-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1453 bp Feature: domain Description: GIIM Note: maturase Location: 12 43-1453 bp Feature: gene Location: 1385-3100 bp Feature: domain Description: Resolvase Location: 1406-1847 bp Feature: domain Description: Resolvase Location: 1406-1847 bp Feature: domain Description: Recombinase Location: 1940-2297 bp Feature: domain Description: Recombinase Location: 1940-2 2 97 bp Feature: domain Description: Zn_ribbon_recom Location: 2342-2546 bp Feature: domain Description: Zn_ribbon_recom Location: 2 342 -2 546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: SELS01000297.1 (814 bp)
Overview 1 RT 1: 87-654 bp Neighborhood of RT #1 [87, 812] RVT-GII GIIM Feature: gene Location: 87-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-3 93 bp Feature: domain Description: GIIM Note: maturase Location: 453-654 bp Feature: domain Description: GIIM Note: maturase Location: 453 -654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SELS01000019.1 (152517 bp)
Overview 1 RT 1: 1-2914 bp Neighborhood of RT #1 [1, 2922] RVT-GII GIIM YccC PhnB Feature: gene Location: 1-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-74 8 bp Feature: domain Description: GIIM Note: maturase Location: 805-1009 bp Feature: domain Description: GIIM Note: maturase Location: 805-1009 bp Feature: gene Location: 1313-2437 bp Feature: domain Description: YccC Location: 1358-2156 bp Feature: domain Description: YccC Location: 1358-2156 bp Feature: gene Location: 2467-2922 bp Feature: domain Description: PhnB Location: 2512-2914 bp Feature: domain Description: PhnB Location: 2512-2914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YccC (COG1289), PhnB (COG2764)

Seq: SELS01000136.1 (7733 bp)
Overview 1 RT 1: 955-6342 bp Neighborhood of RT #1 [955, 6342] COG3547 RVT_N RVT-GII COG3293 DDE_Tnp_1_2 RVT-GII DnaJ Feature: gene Location: 955-1197 bp Feature: gene Location: 1230-2249 bp Feature: domain Description: COG3547 Location: 1242-2193 bp Feature: domain Description: COG35 47 Location: 1242-2193 bp Feature: gene Location: 2752-3273 bp Feature: domain Description: RVT_N Location: 2758-2962 bp Feature: domain Description: RVT_N Location: 275 8-2962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3007-3148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3007-3148 bp Feature: gene Location: 3293-4105 bp Feature: domain Description: COG3293 Location: 3320-3710 bp Feature: domain Description: COG3293 Location: 3320-3710 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3839-4073 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3839-4073 bp Feature: gene Location: 4144-4284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4147-4249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4147-4249 bp Feature: gene Location: 4608-5777 bp Feature: domain Description: DnaJ Location: 5289-5403 bp Feature: domain Description: DnaJ Location: 5 289-5 403 bp Feature: gene Location: 5959-6342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, COG3293 (Transposase ), DDE_Tnp_1_2 (pfam13586), DnaJ (smart00271)

Seq: SELS01000350.1 (433 bp)
Overview 1 RT 1: 1-433 bp Neighborhood of RT #1 [1, 432] RVT-GII Feature: gene Location: 1-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SELS01000104.1 (15635 bp)
Overview 1 RT 1: 5605-10258 bp Neighborhood of RT #1 [5605, 10272] RVT-GII GIIM PBP2_NikA_DppA_OppA_like_1 DadA Feature: gene Location: 5605-5826 bp Feature: gene Location: 6026-6175 bp Feature: gene Location: 6177-7421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-7038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-7 038 bp Feature: domain Description: GIIM Note: maturase Location: 7116-7338 bp Feature: domain Description: GIIM Note: maturase Location: 7 116-7 338 bp Feature: gene Location: 7560-9038 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_1 Location: 7566-8967 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_1 Location: 7 566-8967 bp Feature: gene Location: 9145-10272 bp Feature: domain Description: DadA Location: 9148-10258 bp Feature: domain Description: DadA Location: 9148-10258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP2_NikA_DppA_OppA_like_1 (cd08508), DadA (COG0665)