myRT

myRT report for GCA_004210875.1_ASM421087v1

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Seq: SEAO01000386.1 Chryseobacterium sp. isolate PMG_151 scaffold_59163, whole genome shotgun sequence (3624 bp)
Overview 1 RT 1: 2-3290 bp Neighborhood of RT #1 [2, 3307] RVT-UG5 INPP5c Feature: gene Location: 2-358 bp Feature: gene Location: 482-3073 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 554-1088 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 554-1 088 bp Feature: gene Location: 3170-3307 bp Feature: domain Description: INPP5c Location: 3182-3290 bp Feature: domain Description: INPP5c Location: 31 82-3290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, INPP5c (cd09074)

Seq: SEAO01000124.1 Chryseobacterium sp. isolate PMG_151 scaffold_21046, whole genome shotgun sequence (7210 bp)
Overview 1 RT 1: 586-7156 bp Neighborhood of RT #1 [586, 7209] RVT_N RVT-GII PRK09183 COG4584 RVT-GII GIIM RES HSDR_N Feature: gene Location: 586-717 bp Feature: gene Location: 1268-1948 bp Feature: domain Description: RVT_N Location: 1307-1553 bp Feature: domain Description: RVT_N Location: 1307-1553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595-1925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595-192 5 bp Feature: gene Location: 2084-2833 bp Feature: domain Description: PRK09183 Location: 2087-2816 bp Feature: domain Description: PRK09183 Location: 2 087-2 816 bp Feature: gene Location: 2881-3879 bp Feature: domain Description: COG4584 Location: 2992-3217 bp Feature: domain Description: COG4584 Location: 2 992 -32 17 bp Feature: gene Location: 3886-4407 bp Feature: gene Location: 4515-5321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4575-4953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4575-4953 bp Feature: domain Description: GIIM Note: maturase Location: 5025-5160 bp Feature: domain Description: GIIM Note: maturase Location: 502 5-5160 bp Feature: gene Location: 5381-6346 bp Feature: domain Description: RES Location: 5927-6293 bp Feature: domain Description: RES Location: 592 7-62 93 bp Feature: gene Location: 6640-7209 bp Feature: domain Description: HSDR_N Location: 6649-7156 bp Feature: domain Description: HSDR_N Location: 6649-7156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), GIIM (pfam08388), RES (smart00953), HSDR_N (pfam04313)

Seq: SEAO01001422.1 Chryseobacterium sp. isolate PMG_151 scaffold_255011, whole genome shotgun sequence (1323 bp)
Overview 1 RT 1: 1-468 bp Neighborhood of RT #1 [1, 1322] RVT-UG9 Feature: gene Location: 1-195 bp Feature: gene Location: 192-1322 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 201-468 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 201-468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9

Seq: SEAO01000540.1 Chryseobacterium sp. isolate PMG_151 scaffold_80419, whole genome shotgun sequence (2938 bp)
Overview 1 RT 1: 127-2937 bp Neighborhood of RT #1 [127, 2937] RVT-Retrons Feature: gene Location: 127-1329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325-961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325-961 bp Feature: gene Location: 1310-2500 bp Feature: gene Location: 2503-2937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: SEAO01000432.1 Chryseobacterium sp. isolate PMG_151 scaffold_65569, whole genome shotgun sequence (3379 bp)
Overview 1 RT 1: 1-3102 bp Neighborhood of RT #1 [1, 3102] RVT-UG8 RVT-UG3 Feature: gene Location: 1-1248 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 973-1249 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 973-1249 bp Feature: gene Location: 1248-2702 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1674-2193 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1674-2193 bp Feature: gene Location: 2875-3102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3

Seq: SEAO01000392.1 Chryseobacterium sp. isolate PMG_151 scaffold_60161, whole genome shotgun sequence (3583 bp)
Overview 1 RT 1: 103-3582 bp Neighborhood of RT #1 [103, 3582] RVT-Retrons Feature: gene Location: 103-315 bp Feature: gene Location: 360-2579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 507-1164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 507-116 4 bp Feature: gene Location: 2576-3166 bp Feature: gene Location: 3163-3582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: SEAO01000495.1 Chryseobacterium sp. isolate PMG_151 scaffold_73790, whole genome shotgun sequence (3115 bp)
Overview 1 RT 1: 2-1499 bp Neighborhood of RT #1 [2, 1499] RVT-UG28b Bac_Flav_CT_N Feature: gene Location: 2-469 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 8-470 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 8-47 0 bp Feature: gene Location: 516-1328 bp Feature: domain Description: Bac_Flav_CT_N Location: 546-1326 bp Feature: domain Description: Bac_Flav_CT_N Location: 546-1326 bp Feature: gene Location: 1332-1499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b, Bac_Flav_CT_N (TIGR03780)

Seq: SEAO01000302.1 Chryseobacterium sp. isolate PMG_151 scaffold_46719, whole genome shotgun sequence (4245 bp)
Overview 1 RT 1: 663-3017 bp Neighborhood of RT #1 [663, 4060] nitrilase RVT-UG5 Feature: gene Location: 663-965 bp Feature: gene Location: 1047-2270 bp Feature: domain Description: nitrilase Location: 1503-2160 bp Feature: domain Description: nitrilase Location: 1503-2160 bp Feature: gene Location: 2270-4060 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2525-3017 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2525-3017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nitrilase (cl11424), RVT-UG5