myRT

myRT report for GCA_004210935.1_ASM421093v1

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Seq: SEGB01000173.1 (3084 bp)
Overview 1 RT 1: 3-3081 bp Neighborhood of RT #1 [3, 3081] DUF4939 retropepsin_like RVT-UG11 RNase_HI_RT_Ty3 Feature: gene Location: 3-2750 bp Feature: domain Description: DUF4939 Location: 360-519 bp Feature: domain Description: DUF4939 Location: 360-51 9 bp Feature: domain Description: retropepsin_like Location: 939-1179 bp Feature: domain Description: retropepsin_like Location: 939-1 1 79 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1626-1800 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 626-1 800 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2121-2463 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 21 21 -2463 bp Feature: gene Location: 2887-3081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4939 (pfam16297), retropepsin_like (cd00303), RVT-UG11, RNase_HI_RT_Ty3 (cd09274)

Seq: SEGB01000169.1 (3119 bp)
Overview 1 RT 1: 1-3004 bp Neighborhood of RT #1 [1, 3117] retropepsin_like RVT-UG11 RNase_HI_RT_Ty3 DUF4939 Feature: gene Location: 1-2253 bp Feature: domain Description: retropepsin_like Location: 445-685 bp Feature: domain Description: retropepsin_like Location: 445-685 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1132-1306 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1132 -1306 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1624-1969 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 162 4-1969 bp Feature: gene Location: 2389-3117 bp Feature: domain Description: DUF4939 Location: 2788-3004 bp Feature: domain Description: DUF4939 Location: 2 788-3004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11, RNase_HI_RT_Ty3 (cd09274), DUF4939 (pfam16297)

Seq: SEGB01000052.1 (6152 bp)
Overview 1 RT 1: 148-6023 bp Neighborhood of RT #1 [148, 6023] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_POL_like Feature: gene Location: 148-1308 bp Feature: gene Location: 1446-4937 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2382-2529 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23 82-2529 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2838-3207 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 283 8-3 207 bp Feature: domain Description: Integrase_H2C2 Location: 3621-3789 bp Feature: domain Description: Integrase_H2C2 Location: 3 621-3 789 bp Feature: domain Description: rve Location: 3846-4191 bp Feature: domain Description: rve Location: 3 846-4191 bp Feature: domain Description: CD_POL_like Location: 4752-4896 bp Feature: domain Description: CD_POL_like Location: 4752-4896 bp Feature: gene Location: 5213-5737 bp Feature: gene Location: 5802-6023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG26/RVT-DGRs/RVT-UG17(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_POL_like (cd18979)

Seq: SEGB01000483.1 (2646 bp)
Overview 1 RT 1: 3-2229 bp Neighborhood of RT #1 [3, 2229] RVT-GII Feature: gene Location: 3-797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-795 bp Feature: gene Location: 1255-1545 bp Feature: gene Location: 1585-2229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SEGB01000065.1 (5583 bp)
Overview 1 RT 1: 20-4791 bp Neighborhood of RT #1 [20, 5354] AIR1 Exo_endo_phos_2 RVT-CRISPR-like Rnase_HI_RT_non_LTR Feature: gene Location: 20-1432 bp Feature: domain Description: AIR1 Location: 1010-1256 bp Feature: domain Description: AIR1 Location: 1010-125 6 bp Feature: gene Location: 1443-5354 bp Feature: domain Description: Exo_endo_phos_2 Location: 1881-2166 bp Feature: domain Description: Exo_endo_phos_2 Location: 1881-2166 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3051-3585 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 305 1-35 85 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 4380-4791 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 4380-4791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), Exo_endo_phos_2 (pfam14529), RVT-CRISPR, Rnase_HI_RT_non_LTR (cd09276)

Seq: SEGB01000179.1 (3046 bp)
Overview 1 RT 1: 79-3045 bp Neighborhood of RT #1 [79, 3044] ArdC RVT-GII Intron_maturas2 HNHc DUF1738 Feature: gene Location: 79-249 bp Feature: domain Description: ArdC Location: 118-241 bp Feature: domain Description: ArdC Location: 118-241 bp Feature: gene Location: 297-890 bp Feature: gene Location: 890-2731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1157-1994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1157-1994 bp Feature: domain Description: Intron_maturas2 Location: 2102-2354 bp Feature: domain Description: Intron_maturas2 Location: 2102-2354 bp Feature: domain Description: HNHc Note: nucleases Location: 2516-2687 bp Feature: domain Description: HNHc Note: nucleases Location: 2516 -26 87 bp Feature: gene Location: 2883-3044 bp Feature: domain Description: DUF1738 Location: 2886-3045 bp Feature: domain Description: DUF1738 Location: 2886 -3045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401)

Seq: SEGB01000427.1 (1724 bp)
Overview 1 RT 1: 1-1722 bp Neighborhood of RT #1 [1, 1722] RVT-GII group_II_RT_mat Feature: gene Location: 1-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-526 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 727-865 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7 27 -865 bp Feature: gene Location: 1342-1722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)