myRT

myRT report for GCA_004216775.1_ASM421677v1

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Seq: SGXF01000013.1 (1906 bp)
Overview 1 RT 1: 74-1298 bp Neighborhood of RT #1 [74, 1465] RVT-GII GIIM Feature: gene Location: 74-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-1 01 6 bp Feature: domain Description: GIIM Note: maturase Location: 1070-1298 bp Feature: domain Description: GIIM Note: maturase Location: 1 070-1 298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SGXF01000010.1 (103334 bp)
Overview 1 RT 1: 18784-21460 bp Neighborhood of RT #1 [18784, 21465] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 18784-19080 bp Feature: domain Description: Phage_holin_5_2 Location: 18832-19063 bp Feature: domain Description: Phage_holin_5_2 Location: 18832 -19063 bp Feature: gene Location: 19092-19430 bp Feature: gene Location: 19433-20629 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19628-20345 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1962 8-2 0345 bp Feature: gene Location: 20840-21325 bp Feature: gene Location: 21322-21465 bp Feature: domain Description: Phage_XkdX Location: 21343-21460 bp Feature: domain Description: Phage_XkdX Location: 2 1343-2 1460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: SGXF01000003.1 (428176 bp)
Overview 1 RT 1: 67009-71690 bp Neighborhood of RT #1 [67009, 71815] HTH_TipAL-Mta TipAS RVT-Retrons APH DHHW DHHW Feature: gene Location: 67009-67890 bp Feature: domain Description: HTH_TipAL-Mta Location: 67018-67318 bp Feature: domain Description: HTH_TipAL-Mta Location: 67018-673 18 bp Feature: domain Description: TipAS Location: 67498-67864 bp Feature: domain Description: TipAS Location: 67498-67864 bp Feature: gene Location: 67960-68217 bp Feature: gene Location: 68438-69439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68603-69158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68603 -69158 bp Feature: gene Location: 69470-70573 bp Feature: domain Description: APH Location: 69557-70268 bp Feature: domain Description: APH Location: 69557-70268 bp Feature: gene Location: 70652-71815 bp Feature: domain Description: DHHW Location: 70754-70892 bp Feature: domain Description: DHHW Location: 70754-70892 bp Feature: domain Description: DHHW Location: 71030-71690 bp Feature: domain Description: DHHW Location: 7103 0-71690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_TipAL-Mta (cd01106), TipAS (pfam07739), RVT-Retrons, APH (pfam01636), DHHW (pfam14286)

Seq: SGXF01000015.1 (1703 bp)
Overview 1 RT 1: 164-1464 bp Neighborhood of RT #1 [164, 1637] RVT-GII GIIM Feature: gene Location: 164-394 bp Feature: gene Location: 354-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-1173 bp Feature: domain Description: GIIM Note: maturase Location: 1233-1464 bp Feature: domain Description: GIIM Note: maturase Location: 1233-14 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SGXF01000006.1 (209298 bp)
Overview 1 RT 1: 184282-190551 bp Neighborhood of RT #1 [184282, 190613] smpB RNase_R RVT-GII GIIM SecG eno Feature: gene Location: 184282-184749 bp Feature: domain Description: smpB Location: 184300-184732 bp Feature: domain Description: smpB Location: 184300-184732 bp Feature: gene Location: 184772-186907 bp Feature: domain Description: RNase_R Location: 184799-186890 bp Feature: domain Description: RNase_R Location: 184799-186890 bp Feature: gene Location: 187059-188240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187167-187782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187167-187782 bp Feature: domain Description: GIIM Note: maturase Location: 187842-188064 bp Feature: domain Description: GIIM Note: maturase Location: 187842-188064 bp Feature: gene Location: 188877-189122 bp Feature: domain Description: SecG Location: 188898-189108 bp Feature: domain Description: SecG Location: 188898-189108 bp Feature: gene Location: 189156-190613 bp Feature: domain Description: eno Location: 189264-190551 bp Feature: domain Description: eno Location: 189264-1905 5 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT smpB (TIGR00086), RNase_R (TIGR02063), RVT-GII, GIIM (pfam08388), SecG (pfam03840), eno (TIGR01060)

Seq: SGXF01000005.1 (240207 bp)
Overview 1 RT 1: 232335-235374 bp Neighborhood of RT #1 [232335, 235374] Phage_XkdX RVT-DGRs Feature: gene Location: 232335-232475 bp Feature: domain Description: Phage_XkdX Location: 232356-232473 bp Feature: domain Description: Phage_XkdX Location: 232356 -232473 bp Feature: gene Location: 232547-232966 bp Feature: gene Location: 233169-234386 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 233364-234084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23336 4-234084 bp Feature: gene Location: 234388-234723 bp Feature: gene Location: 235042-235374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs

Seq: SGXF01000001.1 (1334533 bp)
Overview 1 RT 1: 961316-966052 bp 2 RT 2: 1220525-1226419 bp Neighborhood of RT #1 [961316, 966052] DUF3795 RVT-GII PAS_3 PAS_3 TMAO_torS Neighborhood of RT #2 [1220525, 1226419] RVT-UG24 Feature: gene Location: 961316-961654 bp Feature: gene Location: 961846-962349 bp Feature: domain Description: DUF3795 Location: 961960-962152 bp Feature: domain Description: DUF37 95 Location: 961960-962152 bp Feature: gene Location: 962392-962607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962482-962605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962482-962605 bp Feature: gene Location: 962750-965905 bp Feature: domain Description: PAS_3 Location: 962846-963071 bp Feature: domain Description: PAS_3 Location: 962846-96307 1 bp Feature: domain Description: PAS_3 Location: 963290-963479 bp Feature: domain Description: PAS_3 Location: 963290-96347 9 bp Feature: domain Description: TMAO_torS Location: 964727-965891 bp Feature: domain Description: TMAO_torS Location: 9647 27 -965891 bp Feature: gene Location: 965921-966052 bp Feature: gene Location: 1220525-1220734 bp Feature: gene Location: 1220930-1221250 bp Feature: gene Location: 1221524-1224994 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1222064-1222520 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1222064-1222520 bp Feature: gene Location: 1224996-1225508 bp Feature: gene Location: 1225538-1226419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3795 (pfam12675), RVT-GII, PAS_3 (pfam08447), TMAO_torS (TIGR02956), RVT-UG24