myRT

myRT report for GCA_004282295.1_ASM428229v1

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Seq: SHGU01000080.1 (2721 bp)
Overview 1 RT 1: 122-2623 bp Neighborhood of RT #1 [122, 2623] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 122-1789 bp Feature: domain Description: RVT_N Location: 170-407 bp Feature: domain Description: RVT_N Location: 1 70-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1 1 00 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 51 -1 385 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1 595-1 754 bp Feature: gene Location: 2069-2251 bp Feature: gene Location: 2363-2623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SHGU01000002.1 (258873 bp)
Overview 1 RT 1: 2-6570 bp Neighborhood of RT #1 [2, 6572] Peptidase_S74 RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-1915 bp Feature: domain Description: Peptidase_S74 Location: 1484-1631 bp Feature: domain Description: Peptidase_S74 Location: 1484-1631 bp Feature: gene Location: 2040-2213 bp Feature: gene Location: 2544-4148 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2835-3426 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 835-342 6 bp Feature: domain Description: TIR_2 Location: 3753-4041 bp Feature: domain Description: TIR_2 Location: 3753-4041 bp Feature: gene Location: 4506-4766 bp Feature: domain Description: PRK10597 Location: 4509-4749 bp Feature: domain Description: PRK10597 Location: 4509-4749 bp Feature: gene Location: 4986-6572 bp Feature: domain Description: prfC Location: 5004-6570 bp Feature: domain Description: prfC Location: 5004-6570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S74 (pfam13884), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: SHGU01000004.1 (239298 bp)
Overview 1 RT 1: 228057-231927 bp Neighborhood of RT #1 [228057, 231927] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 228057-228383 bp Feature: domain Description: InsE Location: 228060-228381 bp Feature: domain Description: InsE Location: 228060-2283 81 bp Feature: gene Location: 228383-228862 bp Feature: domain Description: PHA02517 Location: 228443-228797 bp Feature: domain Description: PHA02517 Location: 228443 -228797 bp Feature: gene Location: 229454-230977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229727-230459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229727-23 0459 bp Feature: domain Description: GIIM Note: maturase Location: 230534-230732 bp Feature: domain Description: GIIM Note: maturase Location: 23 053 4-23 073 2 bp Feature: gene Location: 231340-231546 bp Feature: domain Description: PHA02517 Location: 231343-231535 bp Feature: domain Description: PHA02517 Location: 23 13 43 -23 153 5 bp Feature: gene Location: 231721-231927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: SHGU01000048.1 (9316 bp)
Overview 1 RT 1: 1488-8425 bp Neighborhood of RT #1 [1488, 9315] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 1488-2507 bp Feature: domain Description: Q Location: 1491-2502 bp Feature: domain Description: Q Location: 14 91-2502 bp Feature: gene Location: 2550-3257 bp Feature: gene Location: 3254-4444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3404-3986 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 04 -3986 bp Feature: gene Location: 4995-6539 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5412-5865 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 54 12-5865 bp Feature: gene Location: 6705-6953 bp Feature: gene Location: 7027-9315 bp Feature: domain Description: Phage_GPA Location: 7438-8425 bp Feature: domain Description: Phage_GPA Location: 74 38-84 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)