myRT

myRT report for GCA_004292775.1_ASM429277v1

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Seq: RDXJ01000120.1 (14744 bp)
Overview 1 RT 1: 1109-6269 bp Neighborhood of RT #1 [1109, 6313] DUF2442 Avd_like RVT-DGRs fmt AAA_21 AAA_21 Feature: gene Location: 1109-1393 bp Feature: domain Description: DUF2442 Location: 1124-1343 bp Feature: domain Description: DUF2442 Location: 1 1 24-1 343 bp Feature: gene Location: 1451-1798 bp Feature: domain Description: Avd_like Location: 1469-1775 bp Feature: domain Description: Avd_like Location: 1 469-1 775 bp Feature: gene Location: 1921-3003 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2131-2773 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 31 -2773 bp Feature: gene Location: 3122-4135 bp Feature: domain Description: fmt Location: 3125-4112 bp Feature: domain Description: fmt Location: 31 25-41 1 2 bp Feature: gene Location: 4982-6313 bp Feature: domain Description: AAA_21 Location: 5081-5234 bp Feature: domain Description: AAA_21 Location: 5081 -5234 bp Feature: domain Description: AAA_21 Location: 5507-6269 bp Feature: domain Description: AAA_21 Location: 5507-6269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2442 (pfam10387), Avd_like (cd16376), RVT-DGRs, fmt (TIGR00460), AAA_21 (pfam13304)

Seq: RDXJ01000080.1 (67031 bp)
Overview 1 RT 1: 45286-53169 bp Neighborhood of RT #1 [45286, 53169] HTH_XRE NACHT RVT-CRISPR cas1 Feature: gene Location: 45286-45798 bp Feature: gene Location: 45836-49753 bp Feature: domain Description: HTH_XRE Location: 45926-46082 bp Feature: domain Description: HTH_XRE Location: 4592 6-46082 bp Feature: domain Description: NACHT Location: 46346-46826 bp Feature: domain Description: NACHT Location: 46346-4682 6 bp Feature: gene Location: 50532-52814 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 50841-51450 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 50841-51450 bp Feature: domain Description: cas1 Location: 51807-52782 bp Feature: domain Description: cas1 Location: 51807-52 782 bp Feature: gene Location: 52822-53034 bp Feature: gene Location: 53038-53169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), NACHT (pfam05729), RVT-CRISPR, cas1 (TIGR00287)

Seq: RDXJ01000051.1 (78233 bp)
Overview 1 RT 1: 46600-51853 bp Neighborhood of RT #1 [46600, 51861] FtsQ RVT_N RVT-GII GIIM McrA InsQ RAYT Feature: gene Location: 46600-47499 bp Feature: domain Description: FtsQ Location: 46624-47458 bp Feature: domain Description: FtsQ Location: 46624-47458 bp Feature: gene Location: 47567-47695 bp Feature: gene Location: 47824-49572 bp Feature: domain Description: RVT_N Location: 47860-48106 bp Feature: domain Description: RVT_N Location: 47860-48106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48148-48817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48148-48817 bp Feature: domain Description: GIIM Note: maturase Location: 48943-49177 bp Feature: domain Description: GIIM Note: maturase Location: 48943 -49177 bp Feature: domain Description: McrA Location: 49255-49531 bp Feature: domain Description: McrA Location: 49255-4953 1 bp Feature: gene Location: 50160-51257 bp Feature: domain Description: InsQ Location: 50262-51243 bp Feature: domain Description: InsQ Location: 50262-51243 bp Feature: gene Location: 51421-51861 bp Feature: domain Description: RAYT Location: 51475-51853 bp Feature: domain Description: RAYT Location: 51475-51853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsQ (pfam03799), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsQ (COG0675), RAYT (COG1943)

Seq: RDXJ01000042.1 (44617 bp)
Overview 1 RT 1: 30304-38331 bp Neighborhood of RT #1 [30304, 38331] KOG0399 RHH_7 RVT_N RVT-GII McrA Feature: gene Location: 30304-35040 bp Feature: domain Description: KOG0399 Location: 30388-35026 bp Feature: domain Description: KOG0399 Location: 30388-35026 bp Feature: gene Location: 35261-35494 bp Feature: domain Description: RHH_7 Location: 35291-35423 bp Feature: domain Description: RHH_7 Location: 35291-354 23 bp Feature: gene Location: 35893-37623 bp Feature: domain Description: RVT_N Location: 36052-36289 bp Feature: domain Description: RVT_N Location: 36052-36289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36349-36973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634 9-36973 bp Feature: domain Description: McrA Location: 37204-37528 bp Feature: domain Description: McrA Location: 37204 -37528 bp Feature: gene Location: 37696-37893 bp Feature: gene Location: 37897-38331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0399 (KOG0399, Glutamate synthase ), RHH_7 (pfam16777), RVT_N (pfam13655), RVT-GII, McrA (COG4058)