myRT

myRT report for GCA_004293365.1_ASM429336v1

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Seq: RDYN01000055.1 (45550 bp)
Overview 1 RT 1: 74-3161 bp Neighborhood of RT #1 [74, 3161] RVT_N RVT-GII InsQ Feature: gene Location: 74-967 bp Feature: domain Description: RVT_N Location: 119-365 bp Feature: domain Description: RVT_N Location: 1 1 9-365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-941 bp Feature: gene Location: 1676-2518 bp Feature: domain Description: InsQ Location: 1706-2462 bp Feature: domain Description: InsQ Location: 1 706-2462 bp Feature: gene Location: 2940-3161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, InsQ (COG0675)

Seq: RDYN01000044.1 (75541 bp)
Overview 1 RT 1: 56197-60468 bp Neighborhood of RT #1 [56197, 60821] CE4_NodB_like_5s_6s CE4_DAC_u1_6s RVT-Retrons Rnc NYN Feature: gene Location: 56197-56862 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 56569-56857 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 56569-56857 bp Feature: gene Location: 56875-57126 bp Feature: domain Description: CE4_DAC_u1_6s Location: 56887-57106 bp Feature: domain Description: CE4_DAC_u1_6s Location: 56887-57106 bp Feature: gene Location: 57336-58733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57882-58500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57882 -58500 bp Feature: gene Location: 58839-59555 bp Feature: domain Description: Rnc Location: 58884-59544 bp Feature: domain Description: Rnc Location: 58884-59544 bp Feature: gene Location: 59919-60821 bp Feature: domain Description: NYN Location: 60081-60468 bp Feature: domain Description: NYN Location: 60081-60468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_NodB_like_5s_6s (cd10918), CE4_DAC_u1_6s (cd10970), RVT-Retrons, Rnc (COG0571), NYN (pfam01936)

Seq: RDYN01000043.1 (53693 bp)
Overview 1 RT 1: 32110-40572 bp Neighborhood of RT #1 [32110, 40655] RVT-CRISPR cas1 HTH_XRE NACHT Peptidase_C19K RHH_5 Feature: gene Location: 32110-32250 bp Feature: gene Location: 32311-32478 bp Feature: gene Location: 33153-35180 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 33342-33951 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 3 3 42-3 3 951 bp Feature: domain Description: cas1 Location: 34170-35148 bp Feature: domain Description: cas1 Location: 3 4170-3 5148 bp Feature: gene Location: 36009-40247 bp Feature: domain Description: HTH_XRE Location: 36099-36255 bp Feature: domain Description: HTH_XRE Location: 3 6099-3 6255 bp Feature: domain Description: NACHT Location: 36519-36999 bp Feature: domain Description: NACHT Location: 3 6519-3 6999 bp Feature: domain Description: Peptidase_C19K Location: 38001-39528 bp Feature: domain Description: Peptidase_C19K Location: 3 8001-3 9528 bp Feature: gene Location: 40440-40655 bp Feature: domain Description: RHH_5 Location: 40470-40572 bp Feature: domain Description: RHH_5 Location: 40470-40572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), NACHT (pfam05729), Peptidase_C19K (cd02667), RHH_5 (pfam07878)

Seq: RDYN01000092.1 (38709 bp)
Overview 1 RT 1: 35730-38527 bp Neighborhood of RT #1 [35730, 38592] InsQ RVT-GII GIIM HNHc Feature: gene Location: 35730-36065 bp Feature: gene Location: 36126-37214 bp Feature: domain Description: InsQ Location: 36141-37101 bp Feature: domain Description: InsQ Location: 3614 1-37101 bp Feature: gene Location: 37684-38592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37690-37828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37690-37828 bp Feature: domain Description: GIIM Note: maturase Location: 37939-38143 bp Feature: domain Description: GIIM Note: maturase Location: 37939-3814 3 bp Feature: domain Description: HNHc Note: nucleases Location: 38362-38527 bp Feature: domain Description: HNHc Note: nucleases Location: 38362-38527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RDYN01000058.1 (81413 bp)
Overview 1 RT 1: 23730-31628 bp Neighborhood of RT #1 [23730, 31729] CobD_Cbib PyrR RVT_N RVT-GII GIIM HNHc TlyC Feature: gene Location: 23730-24809 bp Feature: domain Description: CobD_Cbib Location: 23757-24738 bp Feature: domain Description: CobD_Cbib Location: 2375 7-24738 bp Feature: gene Location: 25163-25696 bp Feature: domain Description: PyrR Location: 25175-25691 bp Feature: domain Description: PyrR Location: 25 175 -25 691 bp Feature: gene Location: 26083-27807 bp Feature: domain Description: RVT_N Location: 26110-26356 bp Feature: domain Description: RVT_N Location: 26110-2635 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26398-27088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26398-27088 bp Feature: domain Description: GIIM Note: maturase Location: 27187-27400 bp Feature: domain Description: GIIM Note: maturase Location: 27187-27400 bp Feature: domain Description: HNHc Note: nucleases Location: 27631-27772 bp Feature: domain Description: HNHc Note: nucleases Location: 27631-27772 bp Feature: gene Location: 29399-30085 bp Feature: gene Location: 30251-31729 bp Feature: domain Description: TlyC Location: 30317-31628 bp Feature: domain Description: TlyC Location: 30317-31628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CobD_Cbib (pfam03186), PyrR (COG2065), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TlyC (COG1253)