myRT

myRT report for GCA_004300505.1_ASM430050v1

Download annotations/find similar RTs

Seq: SEXI01000042.1 (22710 bp)
Overview 1 RT 1: 1563-6603 bp Neighborhood of RT #1 [1563, 6617] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 1563-1706 bp Feature: gene Location: 1799-2983 bp Feature: domain Description: HTH_XRE Location: 1829-1973 bp Feature: domain Description: HTH_XRE Location: 1 829-1 973 bp Feature: domain Description: Rol_Rep_N Location: 2006-2270 bp Feature: domain Description: Rol_Rep_N Location: 2006-2270 bp Feature: domain Description: Rep_trans Location: 2294-2906 bp Feature: domain Description: Rep_trans Location: 2294-2906 bp Feature: gene Location: 3863-5773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4196-4934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 96-4934 bp Feature: domain Description: HNHc Note: nucleases Location: 5489-5654 bp Feature: domain Description: HNHc Note: nucleases Location: 5489-5654 bp Feature: gene Location: 5961-6101 bp Feature: gene Location: 6114-6617 bp Feature: domain Description: ArdA Location: 6132-6603 bp Feature: domain Description: ArdA Location: 61 32-6603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: SEXI01000032.1 (28195 bp)
Overview 1 RT 1: 15754-21607 bp Neighborhood of RT #1 [15754, 21726] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 15754-17448 bp Feature: domain Description: VirB4 Location: 16072-16756 bp Feature: domain Description: VirB4 Location: 16072 -16756 bp Feature: gene Location: 17716-17949 bp Feature: gene Location: 18136-20013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18451-19189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18451-19189 bp Feature: domain Description: HNHc Note: nucleases Location: 19747-19900 bp Feature: domain Description: HNHc Note: nucleases Location: 19747-19900 bp Feature: gene Location: 20201-20521 bp Feature: gene Location: 20521-21726 bp Feature: domain Description: Glucosaminidase Location: 20797-21193 bp Feature: domain Description: Glucosaminidase Location: 2 0797-2 1193 bp Feature: domain Description: Peptidase_M23 Location: 21370-21607 bp Feature: domain Description: Peptidase_M2 3 Location: 2 1370-2 1607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: SEXI01000112.1 (3375 bp)
Overview 1 RT 1: 44-2673 bp Neighborhood of RT #1 [44, 3335] HsdM RVT-AbiP2 Feature: gene Location: 44-1522 bp Feature: domain Description: HsdM Location: 65-1490 bp Feature: domain Description: HsdM Location: 65-1490 bp Feature: gene Location: 1860-3335 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2208-2673 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2208-2673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2