myRT

myRT report for GCA_004305025.1_ASM430502v1

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Seq: SINP01000002.1 (1053277 bp)
Overview 1 RT 1: 748627-751152 bp Neighborhood of RT #1 [748627, 751152] AzoR RVT-GII Feature: gene Location: 748627-749088 bp Feature: domain Description: AzoR Location: 748633-748936 bp Feature: domain Description: AzoR Location: 748633-748936 bp Feature: gene Location: 749207-749539 bp Feature: gene Location: 749642-750820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750053-750743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750053-750743 bp Feature: gene Location: 750110-750799 bp Feature: gene Location: 750817-751152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AzoR (COG1182), RVT-GII

Seq: SINP01000009.1 (61609 bp)
Overview 1 RT 1: 1-1692 bp Neighborhood of RT #1 [1, 1778] RVT-GII DDE_Tnp_IS66_C DDE_Tnp_IS240 Feature: gene Location: 1-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: gene Location: 1164-1301 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1173-1269 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1173-12 69 bp Feature: gene Location: 1359-1778 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1404-1692 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 1404-1692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS240 (pfam13610)

Seq: SINP01000014.1 (3384 bp)
Overview 1 RT 1: 60-3218 bp Neighborhood of RT #1 [60, 3325] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM Feature: gene Location: 60-1661 bp Feature: domain Description: COG4584 Location: 246-1044 bp Feature: domain Description: COG4584 Location: 246-1044 bp Feature: domain Description: COG4584 Location: 1047-1653 bp Feature: domain Description: COG4584 Location: 1047-1653 bp Feature: gene Location: 1675-2451 bp Feature: domain Description: IstB_IS21_ATP Location: 1747-1828 bp Feature: domain Description: IstB_IS21_ATP Location: 1747-1828 bp Feature: domain Description: IstB_IS21 Location: 1834-2368 bp Feature: domain Description: IstB_IS21 Location: 183 4-23 68 bp Feature: gene Location: 2588-3325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2597-2930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2597-293 0 bp Feature: domain Description: GIIM Note: maturase Location: 3011-3218 bp Feature: domain Description: GIIM Note: maturase Location: 3 011-3 218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388)

Seq: SINP01000026.1 (247 bp)
Overview 1 RT 1: 2-242 bp Neighborhood of RT #1 [2, 244] RVT-GII Feature: gene Location: 2-244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-24 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SINP01000013.1 (3721 bp)
Overview 1 RT 1: 107-3609 bp Neighborhood of RT #1 [107, 3683] IstB_IS21_ATP IstB_IS21 COG4584 COG4584 RVT-GII Feature: gene Location: 107-883 bp Feature: domain Description: IstB_IS21_ATP Location: 179-260 bp Feature: domain Description: IstB_IS21_ATP Location: 179-260 bp Feature: domain Description: IstB_IS21 Location: 266-800 bp Feature: domain Description: IstB_IS21 Location: 266-800 bp Feature: gene Location: 897-2498 bp Feature: domain Description: COG4584 Location: 1083-1881 bp Feature: domain Description: COG45 84 Location: 1083-1881 bp Feature: domain Description: COG4584 Location: 1884-2490 bp Feature: domain Description: COG45 84 Location: 1884-2490 bp Feature: gene Location: 2538-3683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276-3609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276-3609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), RVT-GII

Seq: SINP01000004.1 (170064 bp)
Overview 1 RT 1: 57213-60186 bp Neighborhood of RT #1 [57213, 60186] RVT-GII GIIM Rve Feature: gene Location: 57213-57782 bp Feature: gene Location: 57798-57953 bp Feature: gene Location: 57992-58873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58109-58478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58109-58478 bp Feature: domain Description: GIIM Note: maturase Location: 58559-58766 bp Feature: domain Description: GIIM Note: maturase Location: 58559-5876 6 bp Feature: gene Location: 59411-59560 bp Feature: domain Description: Rve Location: 59414-59558 bp Feature: domain Description: Rve Location: 59414-59558 bp Feature: gene Location: 59893-60186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Rve (COG3316)

Seq: SINP01000001.1 (5034544 bp)
Overview 1 RT 1: 3580754-3585038 bp 2 RT 2: 3753778-3760682 bp Neighborhood of RT #1 [3580754, 3585038] SBP56 RVT-GII GIIM DUF883 Neighborhood of RT #2 [3753778, 3760720] YbjD YbjD UvrD UvrD RVT-UG12 Vsr Feature: gene Location: 3580754-3581422 bp Feature: gene Location: 3581447-3582847 bp Feature: domain Description: SBP56 Location: 3581462-3582833 bp Feature: domain Description: SBP56 Location: 3581462-3582833 bp Feature: gene Location: 3583079-3583816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3583088-3583421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3583088-3583421 bp Feature: domain Description: GIIM Note: maturase Location: 3583502-3583709 bp Feature: domain Description: GIIM Note: maturase Location: 3583502-35837 09 bp Feature: gene Location: 3584355-3584693 bp Feature: domain Description: DUF883 Location: 3584391-3584655 bp Feature: domain Description: DUF883 Location: 3584391-3584655 bp Feature: gene Location: 3584832-3585038 bp Feature: gene Location: 3753778-3755784 bp Feature: domain Description: YbjD Location: 3753781-3753985 bp Feature: domain Description: YbjD Location: 37 537 81-37 53985 bp Feature: domain Description: YbjD Location: 3754750-3755218 bp Feature: domain Description: YbjD Location: 37 547 50-37 55218 bp Feature: gene Location: 3755781-3757640 bp Feature: domain Description: UvrD Location: 3755865-3757038 bp Feature: domain Description: UvrD Location: 37 55865-37 57 038 bp Feature: domain Description: UvrD Location: 3757341-3757554 bp Feature: domain Description: UvrD Location: 37 57 341-37 57 554 bp Feature: gene Location: 3757656-3759359 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3758061-3758490 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 37 58061-37 58490 bp Feature: gene Location: 3759683-3760162 bp Feature: gene Location: 3760301-3760720 bp Feature: domain Description: Vsr Location: 3760307-3760682 bp Feature: domain Description: Vsr Location: 37 60307 -37 60682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SBP56 (pfam05694), RVT-GII, GIIM (pfam08388), DUF883 (pfam05957), YbjD (COG3593), UvrD (COG0210), RVT-UG12, Vsr (pfam03852)

Seq: SINP01000007.1 (217066 bp)
Overview 1 RT 1: 2-2350 bp Neighborhood of RT #1 [2, 2358] RVT-GII GIIM nodJ PRK13536 Feature: gene Location: 2-769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-374 bp Feature: domain Description: GIIM Note: maturase Location: 455-662 bp Feature: domain Description: GIIM Note: maturase Location: 455-662 bp Feature: gene Location: 1001-1789 bp Feature: domain Description: nodJ Location: 1037-1781 bp Feature: domain Description: nodJ Location: 1037-178 1 bp Feature: gene Location: 1786-2358 bp Feature: domain Description: PRK13536 Location: 1789-2350 bp Feature: domain Description: PRK13536 Location: 178 9-2350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), nodJ (TIGR01291), PRK13536 (nodulation factor ABC transporter ATP-binding protein NodI)

Seq: SINP01000016.1 (2889 bp)
Overview 1 RT 1: 1-2586 bp Neighborhood of RT #1 [1, 2618] RVT-GII HTH_28 HTH_28 PHA02517 Feature: gene Location: 1-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739 -1063 bp Feature: gene Location: 1252-1785 bp Feature: domain Description: HTH_28 Location: 1276-1414 bp Feature: domain Description: HTH_28 Location: 1276-1414 bp Feature: domain Description: HTH_28 Location: 1441-1603 bp Feature: domain Description: HTH_28 Location: 1441-1603 bp Feature: gene Location: 1860-2618 bp Feature: domain Description: PHA02517 Location: 1875-2586 bp Feature: domain Description: PHA02517 Location: 1875-2586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed)