myRT

myRT report for GCA_004305315.1_ASM430531v1

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Seq: SIMR01000008.1 (74033 bp)
Overview 1 RT 1: 24333-27057 bp Neighborhood of RT #1 [24333, 27057] PRK01250 KOG1175 RVT-GII GIIM Feature: gene Location: 24333-25076 bp Feature: domain Description: PRK01250 Location: 24522-25044 bp Feature: domain Description: PRK01 250 Location: 24522-25044 bp Feature: gene Location: 25054-25278 bp Feature: domain Description: KOG1175 Location: 25060-25243 bp Feature: domain Description: KOG1 1 75 Location: 25060-25243 bp Feature: gene Location: 25397-26278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25514-25883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2551 4-25883 bp Feature: domain Description: GIIM Note: maturase Location: 25964-26171 bp Feature: domain Description: GIIM Note: maturase Location: 25964-261 71 bp Feature: gene Location: 26317-26472 bp Feature: gene Location: 26488-27057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000027.1 (2207 bp)
Overview 1 RT 1: 71-2099 bp Neighborhood of RT #1 [71, 2206] Transposase_mut RVT-GII GIIM Feature: gene Location: 71-1270 bp Feature: domain Description: Transposase_mut Location: 83-1184 bp Feature: domain Description: Transposase_mut Location: 83-1184 bp Feature: gene Location: 1439-2206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1442-1811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1442 -1811 bp Feature: domain Description: GIIM Note: maturase Location: 1892-2099 bp Feature: domain Description: GIIM Note: maturase Location: 1892 -2 099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000020.1 (3719 bp)
Overview 1 RT 1: 106-3608 bp Neighborhood of RT #1 [106, 3682] IstB_IS21_ATP IstB_IS21 COG4584 COG4584 RVT-GII Feature: gene Location: 106-882 bp Feature: domain Description: IstB_IS21_ATP Location: 178-259 bp Feature: domain Description: IstB_IS21_ATP Location: 178-259 bp Feature: domain Description: IstB_IS21 Location: 265-799 bp Feature: domain Description: IstB_IS21 Location: 265-799 bp Feature: gene Location: 896-2497 bp Feature: domain Description: COG4584 Location: 1082-1880 bp Feature: domain Description: COG4584 Location: 1082-1880 bp Feature: domain Description: COG4584 Location: 1883-2489 bp Feature: domain Description: COG4584 Location: 1883 -2489 bp Feature: gene Location: 2537-3682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3275-3608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 275-3 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000024.1 (2889 bp)
Overview 1 RT 1: 1-2586 bp Neighborhood of RT #1 [1, 2618] RVT-GII HTH_28 HTH_28 PHA02517 Feature: gene Location: 1-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: gene Location: 1252-1785 bp Feature: domain Description: HTH_28 Location: 1276-1414 bp Feature: domain Description: HTH_28 Location: 1276-14 14 bp Feature: domain Description: HTH_28 Location: 1441-1603 bp Feature: domain Description: HTH_28 Location: 14 4 1-1603 bp Feature: gene Location: 1860-2618 bp Feature: domain Description: PHA02517 Location: 1875-2586 bp Feature: domain Description: PHA02517 Location: 1875-2586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000013.1 (27799 bp)
Overview 1 RT 1: 1-1692 bp Neighborhood of RT #1 [1, 1778] RVT-GII DDE_Tnp_IS66_C DDE_Tnp_IS240 Feature: gene Location: 1-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1063 bp Feature: gene Location: 1164-1301 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1173-1269 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1173-1269 bp Feature: gene Location: 1359-1778 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1404-1692 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1404-1692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000002.1 (935057 bp)
Overview 1 RT 1: 815406-818491 bp Neighborhood of RT #1 [815406, 818574] RVT-GII GIIM ECH_2 PAS_9 HTH_LUXR Feature: gene Location: 815406-815975 bp Feature: gene Location: 815991-816146 bp Feature: gene Location: 816185-817066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816302-816671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816 302-816 6 71 bp Feature: domain Description: GIIM Note: maturase Location: 816752-816959 bp Feature: domain Description: GIIM Note: maturase Location: 816 752-816 959 bp Feature: gene Location: 817165-817902 bp Feature: domain Description: ECH_2 Location: 817168-817870 bp Feature: domain Description: ECH_2 Location: 81716 8-817870 bp Feature: gene Location: 817972-818574 bp Feature: domain Description: PAS_9 Location: 818017-818242 bp Feature: domain Description: PAS_9 Location: 818017-818242 bp Feature: domain Description: HTH_LUXR Location: 818329-818491 bp Feature: domain Description: HTH_LUXR Location: 818329-818491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000023.1 (3398 bp)
Overview 1 RT 1: 124-3282 bp Neighborhood of RT #1 [124, 3389] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM Feature: gene Location: 124-1725 bp Feature: domain Description: COG4584 Location: 310-1108 bp Feature: domain Description: COG4584 Location: 310-1108 bp Feature: domain Description: COG4584 Location: 1111-1717 bp Feature: domain Description: COG4584 Location: 1111-17 17 bp Feature: gene Location: 1739-2515 bp Feature: domain Description: IstB_IS21_ATP Location: 1811-1892 bp Feature: domain Description: IstB_IS21_ATP Location: 1811-1892 bp Feature: domain Description: IstB_IS21 Location: 1898-2432 bp Feature: domain Description: IstB_IS21 Location: 1898-2432 bp Feature: gene Location: 2697-3389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700-2994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 00-2994 bp Feature: domain Description: GIIM Note: maturase Location: 3075-3282 bp Feature: domain Description: GIIM Note: maturase Location: 307 5-3282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000028.1 (1870 bp)
Overview 1 RT 1: 38-1466 bp Neighborhood of RT #1 [38, 1861] RVT-GII Feature: gene Location: 38-1861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000001.1 (4949676 bp)
Overview 1 RT 1: 79966-87912 bp 2 RT 2: 135717-143312 bp 3 RT 3: 1391036-1396261 bp 4 RT 4: 1700384-1703848 bp 5 RT 5: 2012628-2018999 bp 6 RT 6: 2122728-2128422 bp 7 RT 7: 3515388-3519672 bp Neighborhood of RT #1 [79966, 87953] Tar Tar RVT-GII GIIM DUF4372 DDE_Tnp_1 BaeS Neighborhood of RT #2 [135717, 143878] PRK07059 PRC RVT-GII GIIM COG3547 KOG2230 Neighborhood of RT #3 [1391036, 1396332] PRK09174 PRK09173 RVT-GII GIIM rnhB SplB Neighborhood of RT #4 [1700384, 1703859] COG3791 RVT-GII GFA COG3791 Neighborhood of RT #5 [2012628, 2019091] COG5001 RVT-GII GIIM SodC MscS Neighborhood of RT #6 [2122728, 2128436] MarR YcbB RVT-GII GIIM PRK13034 Neighborhood of RT #7 [3515388, 3519672] SBP56 RVT-GII GIIM DUF883 Feature: gene Location: 79966-80496 bp Feature: gene Location: 80907-82904 bp Feature: domain Description: Tar Location: 81333-81858 bp Feature: domain Description: Tar Location: 81333-81858 bp Feature: domain Description: Tar Location: 81885-82758 bp Feature: domain Description: Tar Location: 81885-82758 bp Feature: gene Location: 83149-84819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83752-84373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83752-84373 bp Feature: domain Description: GIIM Note: maturase Location: 84421-84634 bp Feature: domain Description: GIIM Note: maturase Location: 84421-84634 bp Feature: gene Location: 85038-86186 bp Feature: domain Description: DUF4372 Location: 85047-85263 bp Feature: domain Description: DUF4372 Location: 85047-85263 bp Feature: domain Description: DDE_Tnp_1 Location: 85395-86025 bp Feature: domain Description: DDE_Tnp_1 Location: 8539 5-86025 bp Feature: gene Location: 86433-87953 bp Feature: domain Description: BaeS Location: 86895-87912 bp Feature: domain Description: BaeS Location: 8689 5-879 12 bp Feature: gene Location: 135717-137417 bp Feature: domain Description: PRK07059 Location: 135759-137415 bp Feature: domain Description: PRK07059 Location: 135759 -137415 bp Feature: gene Location: 137682-138074 bp Feature: domain Description: PRC Location: 137754-137973 bp Feature: domain Description: PRC Location: 137754-1379 73 bp Feature: gene Location: 138323-139993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138926-139547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389 26-139 547 bp Feature: domain Description: GIIM Note: maturase Location: 139595-139808 bp Feature: domain Description: GIIM Note: maturase Location: 139 59 5-139 808 bp Feature: gene Location: 140178-141230 bp Feature: domain Description: COG3547 Location: 140313-141222 bp Feature: domain Description: COG3547 Location: 140313-141222 bp Feature: gene Location: 141404-143878 bp Feature: domain Description: KOG2230 Location: 141500-143312 bp Feature: domain Description: KOG2230 Location: 141500-143312 bp Feature: gene Location: 1391036-1391659 bp Feature: domain Description: PRK09174 Location: 1391042-1391651 bp Feature: domain Description: PRK09 174 Location: 139 1042-139 1651 bp Feature: gene Location: 1391663-1392154 bp Feature: domain Description: PRK09173 Location: 1391678-1392152 bp Feature: domain Description: PRK09 173 Location: 139 1678-139 2152 bp Feature: gene Location: 1392402-1394072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1393005-1393626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139 3005-139 3626 bp Feature: domain Description: GIIM Note: maturase Location: 1393674-1393887 bp Feature: domain Description: GIIM Note: maturase Location: 139 3674-139 3887 bp Feature: gene Location: 1394184-1394969 bp Feature: domain Description: rnhB Location: 1394340-1394919 bp Feature: domain Description: rnhB Location: 139 4340-139 49 19 bp Feature: gene Location: 1395175-1396332 bp Feature: domain Description: SplB Location: 1395382-1396261 bp Feature: domain Description: SplB Location: 139 5382-139 6261 bp Feature: gene Location: 1700384-1700779 bp Feature: gene Location: 1700963-1701094 bp Feature: domain Description: COG3791 Location: 1700972-1701074 bp Feature: domain Description: COG379 1 Location: 17009 72-1701074 bp Feature: gene Location: 1701804-1703024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701966-1702650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17019 66-1702650 bp Feature: gene Location: 1703200-1703394 bp Feature: domain Description: GFA Location: 1703206-1703338 bp Feature: domain Description: GFA Location: 1703206-1703338 bp Feature: gene Location: 1703443-1703859 bp Feature: domain Description: COG3791 Location: 1703446-1703848 bp Feature: domain Description: COG379 1 Location: 1703446-1703848 bp Feature: gene Location: 2012628-2014532 bp Feature: domain Description: COG5001 Location: 2013174-2014464 bp Feature: domain Description: COG5001 Location: 2013174-2014464 bp Feature: gene Location: 2014973-2015314 bp Feature: gene Location: 2015562-2017232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016165-2016786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016165-2016786 bp Feature: domain Description: GIIM Note: maturase Location: 2016834-2017047 bp Feature: domain Description: GIIM Note: maturase Location: 2016834-2017047 bp Feature: gene Location: 2017580-2018095 bp Feature: domain Description: SodC Location: 2017610-2018093 bp Feature: domain Description: SodC Location: 2017610-201809 3 bp Feature: gene Location: 2018207-2019091 bp Feature: domain Description: MscS Location: 2018285-2018999 bp Feature: domain Description: MscS Location: 2018285-20189 9 9 bp Feature: gene Location: 2122728-2123243 bp Feature: domain Description: MarR Location: 2122860-2123208 bp Feature: domain Description: MarR Location: 2122860-2123208 bp Feature: gene Location: 2123688-2124989 bp Feature: domain Description: YcbB Location: 2123736-2124984 bp Feature: domain Description: YcbB Location: 2123736-21249 84 bp Feature: gene Location: 2125239-2126909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2125842-2126463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2125842-2126463 bp Feature: domain Description: GIIM Note: maturase Location: 2126511-2126724 bp Feature: domain Description: GIIM Note: maturase Location: 2126511-2126724 bp Feature: gene Location: 2126916-2127104 bp Feature: gene Location: 2127138-2128436 bp Feature: domain Description: PRK13034 Location: 2127162-2128422 bp Feature: domain Description: PRK13034 Location: 2127162-2128422 bp Feature: gene Location: 3515388-3516056 bp Feature: gene Location: 3516081-3517481 bp Feature: domain Description: SBP56 Location: 3516096-3517467 bp Feature: domain Description: SBP56 Location: 351609 6-3517467 bp Feature: gene Location: 3517713-3518450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3517722-3518055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3517722-3518055 bp Feature: domain Description: GIIM Note: maturase Location: 3518136-3518343 bp Feature: domain Description: GIIM Note: maturase Location: 3518136-3518343 bp Feature: gene Location: 3518989-3519327 bp Feature: domain Description: DUF883 Location: 3519025-3519289 bp Feature: domain Description: DUF883 Location: 3519 025-3519 289 bp Feature: gene Location: 3519466-3519672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIMR01000007.1 (209322 bp)
Overview 1 RT 1: 206509-209214 bp Neighborhood of RT #1 [206509, 209321] PRK13536 nodJ RVT-GII GIIM Feature: gene Location: 206509-207537 bp Feature: domain Description: PRK13536 Location: 206578-207529 bp Feature: domain Description: PRK13536 Location: 206578-207529 bp Feature: gene Location: 207534-208322 bp Feature: domain Description: nodJ Location: 207570-208314 bp Feature: domain Description: nodJ Location: 207570-208314 bp Feature: gene Location: 208554-209321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208557-208926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208557-208926 bp Feature: domain Description: GIIM Note: maturase Location: 209007-209214 bp Feature: domain Description: GIIM Note: maturase Location: 209007-209214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT