myRT

myRT report for GCA_004306885.1_ASM430688v1

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Seq: SIKD01000007.1 (96186 bp)
Overview 1 RT 1: 92969-95924 bp Neighborhood of RT #1 [92969, 96115] RVT-GII GIIM Feature: gene Location: 92969-93652 bp Feature: gene Location: 93725-94120 bp Feature: gene Location: 94445-96115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95048-95669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95048-95669 bp Feature: domain Description: GIIM Note: maturase Location: 95723-95924 bp Feature: domain Description: GIIM Note: maturase Location: 95723-95924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIKD01000001.1 (5009649 bp)
Overview 1 RT 1: 453377-464204 bp 2 RT 2: 640123-643501 bp 3 RT 3: 1656090-1661818 bp 4 RT 4: 1727694-1735465 bp 5 RT 5: 2842544-2848047 bp 6 RT 6: 3158599-3164910 bp 7 RT 7: 3490202-3498330 bp 8 RT 8: 3834379-3840147 bp 9 RT 9: 3941243-3948706 bp 10 RT 10: 4329707-4336029 bp 11 RT 11: 4570923-4576390 bp Neighborhood of RT #1 [453377, 464206] AsmA ac_ac_CoA_syn RVT-GII GIIM PAS_8 CitA BaeS COG5490 Neighborhood of RT #2 [640123, 643501] PRK09174 PRK09173 RVT-GII GIIM Neighborhood of RT #3 [1656090, 1661820] Lrp Ald RVT-GII GIIM GlxA YdfG Neighborhood of RT #4 [1727694, 1735665] valS FadL RVT-GII GIIM SLR Neighborhood of RT #5 [2842544, 2848047] CHASE2 CHD RimL RVT-GII GIIM NT_KNTase_like Neighborhood of RT #6 [3158599, 3165257] PIN_Sll0205-like Phd RVT-GII GIIM PRK05764 marine_srt_targ Neighborhood of RT #7 [3490202, 3498330] SLC-NCS1sbd_CobB-like TMAO_torS OmpR RVT-GII GIIM PBP1_ABC_LIVBP_like Neighborhood of RT #8 [3834379, 3840188] LysR YfeH RVT-GII GIIM PRK10743 PldB Neighborhood of RT #9 [3941243, 3948714] FGGY_D-XK_EcXK-like HTH_LacI PBP1_uncharacterized_sugar_binding RVT-GII GIIM efflux_EmrB EmrA Neighborhood of RT #10 [4329707, 4336034] DUF2794 COG5429 RVT-GII GIIM PRK09277 Neighborhood of RT #11 [4570923, 4576395] gyrB RVT-GII GIIM Nitroreductase_2 COG3553 Feature: gene Location: 453377-455269 bp Feature: domain Description: AsmA Location: 453461-455231 bp Feature: domain Description: AsmA Location: 453461-4552 31 bp Feature: gene Location: 455545-457497 bp Feature: domain Description: ac_ac_CoA_syn Location: 455557-457495 bp Feature: domain Description: ac_ac_CoA_syn Location: 455557-457495 bp Feature: gene Location: 457905-459575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458508-459129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458508-45912 9 bp Feature: domain Description: GIIM Note: maturase Location: 459183-459384 bp Feature: domain Description: GIIM Note: maturase Location: 459183-459384 bp Feature: gene Location: 459647-463543 bp Feature: domain Description: PAS_8 Location: 462041-462143 bp Feature: domain Description: PAS_8 Location: 462 041-462 143 bp Feature: domain Description: CitA Location: 462437-462611 bp Feature: domain Description: CitA Location: 462 437-462 611 bp Feature: domain Description: BaeS Location: 462746-463532 bp Feature: domain Description: BaeS Location: 462 746-463532 bp Feature: gene Location: 463757-464206 bp Feature: domain Description: COG5490 Location: 463760-464204 bp Feature: domain Description: COG5490 Location: 463760-4642 04 bp Feature: gene Location: 640123-640746 bp Feature: domain Description: PRK09174 Location: 640129-640738 bp Feature: domain Description: PRK09174 Location: 64012 9-640738 bp Feature: gene Location: 640750-641238 bp Feature: domain Description: PRK09173 Location: 640762-641236 bp Feature: domain Description: PRK09173 Location: 640762 -6412 36 bp Feature: gene Location: 641487-643157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642090-642711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642 090-642 711 bp Feature: domain Description: GIIM Note: maturase Location: 642765-642966 bp Feature: domain Description: GIIM Note: maturase Location: 642 765-642 966 bp Feature: gene Location: 643164-643313 bp Feature: gene Location: 643364-643501 bp Feature: gene Location: 1656090-1656551 bp Feature: domain Description: Lrp Location: 1656093-1656534 bp Feature: domain Description: Lrp Location: 1656093-1656534 bp Feature: gene Location: 1656708-1657826 bp Feature: domain Description: Ald Location: 1656711-1657815 bp Feature: domain Description: Ald Location: 1656711-1657815 bp Feature: gene Location: 1658099-1659769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1658702-1659323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1658702 -165932 3 bp Feature: domain Description: GIIM Note: maturase Location: 1659377-1659578 bp Feature: domain Description: GIIM Note: maturase Location: 1659377-1659578 bp Feature: gene Location: 1659891-1660916 bp Feature: domain Description: GlxA Location: 1660515-1660911 bp Feature: domain Description: GlxA Location: 1660515-1660911 bp Feature: gene Location: 1661071-1661820 bp Feature: domain Description: YdfG Location: 1661074-1661818 bp Feature: domain Description: YdfG Location: 1661074-1661818 bp Feature: gene Location: 1727694-1730537 bp Feature: domain Description: valS Location: 1727700-1730523 bp Feature: domain Description: valS Location: 172 7700-173052 3 bp Feature: gene Location: 1730935-1732209 bp Feature: domain Description: FadL Location: 1731007-1732207 bp Feature: domain Description: FadL Location: 1731007-1732 2 07 bp Feature: gene Location: 1732457-1734127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733060-1733681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733060-1733681 bp Feature: domain Description: GIIM Note: maturase Location: 1733735-1733936 bp Feature: domain Description: GIIM Note: maturase Location: 1733735-1733936 bp Feature: gene Location: 1734231-1734842 bp Feature: gene Location: 1734862-1735665 bp Feature: domain Description: SLR Location: 1735036-1735465 bp Feature: domain Description: SLR Location: 1735036-1735465 bp Feature: gene Location: 2842544-2844514 bp Feature: domain Description: CHASE2 Location: 2842670-2843480 bp Feature: domain Description: CHASE2 Location: 2 842 670-2 843480 bp Feature: domain Description: CHD Location: 2843777-2844338 bp Feature: domain Description: CHD Location: 2 843777-2 844338 bp Feature: gene Location: 2844563-2845102 bp Feature: domain Description: RimL Location: 2844611-2845055 bp Feature: domain Description: RimL Location: 2 844611-2 845055 bp Feature: gene Location: 2845284-2846954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845887-2846508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 845887-2 846508 bp Feature: domain Description: GIIM Note: maturase Location: 2846562-2846763 bp Feature: domain Description: GIIM Note: maturase Location: 2 846562 -2 846763 bp Feature: gene Location: 2847084-2847869 bp Feature: domain Description: NT_KNTase_like Location: 2847168-2847369 bp Feature: domain Description: NT_KNTase_like Location: 2 847168-2 847369 bp Feature: gene Location: 2847919-2848047 bp Feature: gene Location: 3158599-3158985 bp Feature: domain Description: PIN_Sll0205-like Location: 3158611-3158968 bp Feature: domain Description: PIN_Sll02 05-like Location: 3158611-3158968 bp Feature: gene Location: 3158988-3159248 bp Feature: domain Description: Phd Location: 3158991-3159225 bp Feature: domain Description: Phd Location: 3158991-31592 2 5 bp Feature: gene Location: 3159364-3161034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3159967-3160588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3159967-3160588 bp Feature: domain Description: GIIM Note: maturase Location: 3160642-3160843 bp Feature: domain Description: GIIM Note: maturase Location: 3160642 -3160843 bp Feature: gene Location: 3161283-3162485 bp Feature: domain Description: PRK05764 Location: 3161292-3162477 bp Feature: domain Description: PRK05764 Location: 31612 92 -3162 477 bp Feature: gene Location: 3162657-3165257 bp Feature: domain Description: marine_srt_targ Location: 3163122-3164910 bp Feature: domain Description: marine_srt_targ Location: 316312 2 -3164910 bp Feature: gene Location: 3490202-3493621 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 3490337-3491672 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 3490337-3491672 bp Feature: domain Description: TMAO_torS Location: 3492170-3493346 bp Feature: domain Description: TMAO_torS Location: 3492 170-3493346 bp Feature: gene Location: 3493683-3494531 bp Feature: domain Description: OmpR Location: 3493689-3494445 bp Feature: domain Description: OmpR Location: 3493689-3494445 bp Feature: gene Location: 3494808-3496478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495411-3496032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495411-3496032 bp Feature: domain Description: GIIM Note: maturase Location: 3496086-3496287 bp Feature: domain Description: GIIM Note: maturase Location: 3496086-34962 87 bp Feature: gene Location: 3496735-3497856 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 3496816-3497809 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 3496816-3497809 bp Feature: gene Location: 3497977-3498330 bp Feature: gene Location: 3834379-3835233 bp Feature: domain Description: LysR Location: 3834385-3835216 bp Feature: domain Description: LysR Location: 3834385-38352 16 bp Feature: gene Location: 3835324-3836328 bp Feature: domain Description: YfeH Location: 3835330-3836299 bp Feature: domain Description: YfeH Location: 3835330-38362 99 bp Feature: gene Location: 3836419-3838089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3837022-3837643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383702 2 -3837643 bp Feature: domain Description: GIIM Note: maturase Location: 3837697-3837898 bp Feature: domain Description: GIIM Note: maturase Location: 3837697-3837898 bp Feature: gene Location: 3838338-3838808 bp Feature: domain Description: PRK10743 Location: 3838341-3838752 bp Feature: domain Description: PRK10743 Location: 3838341-3838752 bp Feature: gene Location: 3839055-3840188 bp Feature: domain Description: PldB Location: 3839247-3840147 bp Feature: domain Description: PldB Location: 38392 47-3840147 bp Feature: gene Location: 3941243-3942694 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 3941246-3942674 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 39412 46-3942 674 bp Feature: gene Location: 3942716-3943738 bp Feature: domain Description: HTH_LacI Location: 3942737-3942884 bp Feature: domain Description: HTH_LacI Location: 3942 737-3942 884 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 3942905-3943721 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 3942 905-394372 1 bp Feature: gene Location: 3943961-3945631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3944564-3945185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3944564-3945185 bp Feature: domain Description: GIIM Note: maturase Location: 3945239-3945440 bp Feature: domain Description: GIIM Note: maturase Location: 39452 39-3945440 bp Feature: gene Location: 3945877-3947475 bp Feature: domain Description: efflux_EmrB Location: 3945961-3947419 bp Feature: domain Description: efflux_EmrB Location: 3945961-3947419 bp Feature: gene Location: 3947503-3948714 bp Feature: domain Description: EmrA Location: 3947671-3948706 bp Feature: domain Description: EmrA Location: 3947671-3948706 bp Feature: gene Location: 4329707-4330108 bp Feature: domain Description: DUF2794 Location: 4329818-4330070 bp Feature: domain Description: DUF2 794 Location: 432 9818-4330070 bp Feature: gene Location: 4330480-4331220 bp Feature: domain Description: COG5429 Location: 4330540-4331206 bp Feature: domain Description: COG542 9 Location: 4330540-43312 06 bp Feature: gene Location: 4331466-4333136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4332069-4332690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4332 069-4332 690 bp Feature: domain Description: GIIM Note: maturase Location: 4332744-4332945 bp Feature: domain Description: GIIM Note: maturase Location: 4332 744-4332 945 bp Feature: gene Location: 4333044-4333376 bp Feature: gene Location: 4333389-4336034 bp Feature: domain Description: PRK09277 Location: 4333395-4336029 bp Feature: domain Description: PRK092 77 Location: 4333395-433602 9 bp Feature: gene Location: 4570923-4573424 bp Feature: domain Description: gyrB Location: 4571025-4573422 bp Feature: domain Description: gyrB Location: 457102 5-457342 2 bp Feature: gene Location: 4573458-4573766 bp Feature: gene Location: 4574085-4575344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4574277-4574898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45742 77-4574898 bp Feature: domain Description: GIIM Note: maturase Location: 4574952-4575153 bp Feature: domain Description: GIIM Note: maturase Location: 4574952 -4575153 bp Feature: gene Location: 4575466-4576065 bp Feature: domain Description: Nitroreductase_2 Location: 4575496-4576042 bp Feature: domain Description: Nitroreductase_2 Location: 4575496-4576042 bp Feature: gene Location: 4576111-4576395 bp Feature: domain Description: COG3553 Location: 4576114-4576390 bp Feature: domain Description: COG3553 Location: 4576114-4576390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIKD01000010.1 (38703 bp)
Overview 1 RT 1: 28772-32961 bp Neighborhood of RT #1 [28772, 32961] NodN OafA RVT-GII GIIM Feature: gene Location: 28772-29263 bp Feature: domain Description: NodN Location: 28796-29225 bp Feature: domain Description: NodN Location: 28796-29225 bp Feature: gene Location: 29550-30653 bp Feature: domain Description: OafA Location: 29568-30639 bp Feature: domain Description: OafA Location: 29568-3 063 9 bp Feature: gene Location: 30888-32558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31491-32112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1491-3 2112 bp Feature: domain Description: GIIM Note: maturase Location: 32166-32367 bp Feature: domain Description: GIIM Note: maturase Location: 3 2166-3 23 67 bp Feature: gene Location: 32466-32774 bp Feature: gene Location: 32788-32961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIKD01000020.1 (4531 bp)
Overview 1 RT 1: 1222-4145 bp Neighborhood of RT #1 [1222, 4336] RVT-GII GIIM Feature: gene Location: 1222-1689 bp Feature: gene Location: 1763-2383 bp Feature: gene Location: 2666-4336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269-3890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269-3890 bp Feature: domain Description: GIIM Note: maturase Location: 3944-4145 bp Feature: domain Description: GIIM Note: maturase Location: 394 4 -4 14 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIKD01000003.1 (694105 bp)
Overview 1 RT 1: 575868-583297 bp Neighborhood of RT #1 [575868, 583314] PnbA RVT-GII GIIM PRK13560 COG3920 PRK13559 Feature: gene Location: 575868-577493 bp Feature: domain Description: PnbA Location: 575985-577467 bp Feature: domain Description: PnbA Location: 5 75 985 -5 77467 bp Feature: gene Location: 577794-578072 bp Feature: gene Location: 578564-580234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 579167-579788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 79167-5 79788 bp Feature: domain Description: GIIM Note: maturase Location: 579842-580043 bp Feature: domain Description: GIIM Note: maturase Location: 5 79842-5 80043 bp Feature: gene Location: 581047-582072 bp Feature: domain Description: PRK13560 Location: 581083-581233 bp Feature: domain Description: PRK135 60 Location: 5 81083-5 81233 bp Feature: domain Description: COG3920 Location: 581425-582034 bp Feature: domain Description: COG3920 Location: 5 81425 -5 82034 bp Feature: gene Location: 582277-583314 bp Feature: domain Description: PRK13559 Location: 582280-583297 bp Feature: domain Description: PRK135 5 9 Location: 5 82280-5 83297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIKD01000017.1 (12002 bp)
Overview 1 RT 1: 270-4653 bp Neighborhood of RT #1 [270, 4775] AbiEi_1 RVT_N RVT-GII GIIM AbiEii DDE_3 Feature: gene Location: 270-1097 bp Feature: domain Description: AbiEi_1 Location: 495-918 bp Feature: domain Description: AbiEi_1 Location: 495-918 bp Feature: gene Location: 1914-3428 bp Feature: domain Description: RVT_N Location: 1938-2139 bp Feature: domain Description: RVT_N Location: 1938-2139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2217-2976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2217-2976 bp Feature: domain Description: GIIM Note: maturase Location: 3051-3273 bp Feature: domain Description: GIIM Note: maturase Location: 3051-3273 bp Feature: gene Location: 3516-4166 bp Feature: domain Description: AbiEii Location: 3543-4041 bp Feature: domain Description: AbiEii Location: 3543-4041 bp Feature: gene Location: 4494-4775 bp Feature: domain Description: DDE_3 Location: 4506-4653 bp Feature: domain Description: DDE_3 Location: 4506 -46 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SIKD01000015.1 (14181 bp)
Overview 1 RT 1: 11883-14178 bp Neighborhood of RT #1 [11883, 14180] Rve GIIM RVT-GII DUF4096 Feature: gene Location: 11883-12149 bp Feature: domain Description: Rve Location: 11910-12144 bp Feature: domain Description: Rve Location: 11910-12144 bp Feature: gene Location: 12188-12550 bp Feature: domain Description: GIIM Note: maturase Location: 12233-12464 bp Feature: domain Description: GIIM Note: maturase Location: 12233-12464 bp Feature: gene Location: 12682-13446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12886-13432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12886-13432 bp Feature: gene Location: 13484-13807 bp Feature: gene Location: 13905-14180 bp Feature: domain Description: DUF4096 Location: 13971-14178 bp Feature: domain Description: DUF4096 Location: 1397 1-1417 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT