myRT

myRT report for GCA_004306915.1_ASM430691v1

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Seq: SIJX01000003.1 (597878 bp)
Overview 1 RT 1: 459137-463216 bp Neighborhood of RT #1 [459137, 463216] PRK09652 anti_sig_ChrR RVT-GII GIIM Feature: gene Location: 459137-459811 bp Feature: domain Description: PRK09652 Location: 459308-459800 bp Feature: domain Description: PRK09652 Location: 459308-459800 bp Feature: gene Location: 459808-460461 bp Feature: domain Description: anti_sig_ChrR Location: 459820-460456 bp Feature: domain Description: anti_sig_ChrR Location: 459820-460456 bp Feature: gene Location: 460740-462410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461343-461964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461 343-461 964 bp Feature: domain Description: GIIM Note: maturase Location: 462018-462219 bp Feature: domain Description: GIIM Note: maturase Location: 46201 8-46221 9 bp Feature: gene Location: 462487-462666 bp Feature: gene Location: 462980-463216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09652 (RNA polymerase sigma factor RpoE; Provisional), anti_sig_ChrR (TIGR02451), RVT-GII, GIIM (pfam08388)

Seq: SIJX01000001.1 (5049747 bp)
Overview 1 RT 1: 424884-435711 bp 2 RT 2: 663063-666441 bp 3 RT 3: 1702613-1712365 bp 4 RT 4: 1774684-1782455 bp 5 RT 5: 2579489-2586812 bp 6 RT 6: 3883903-3889671 bp 7 RT 7: 4035666-4044894 bp 8 RT 8: 4654159-4659915 bp Neighborhood of RT #1 [424884, 435713] AsmA ac_ac_CoA_syn RVT-GII GIIM PAS_8 CitA BaeS COG5490 Neighborhood of RT #2 [663063, 666441] PRK09174 PRK09173 RVT-GII GIIM Neighborhood of RT #3 [1702613, 1712365] Lrp Ald RVT-GII GIIM GlxA YdfG RutF COG5470 RVT-GII GIIM Neighborhood of RT #4 [1774684, 1782655] valS FadL RVT-GII GIIM SLR Neighborhood of RT #5 [2579489, 2586937] KOG0734 MPP_MS158 RVT-UG2 DUF4041 T5orf172 Neighborhood of RT #6 [3883903, 3889712] LysR YfeH RVT-GII GIIM PRK10743 PldB Neighborhood of RT #7 [4035666, 4044941] Chb RVT-GII GIIM AcrB RND_mfp Neighborhood of RT #8 [4654159, 4659938] OmpR PckA RVT-GII GIIM PRK09256 AlkB Feature: gene Location: 424884-426776 bp Feature: domain Description: AsmA Location: 424968-426738 bp Feature: domain Description: AsmA Location: 42 4968-42 6738 bp Feature: gene Location: 427052-429004 bp Feature: domain Description: ac_ac_CoA_syn Location: 427064-429002 bp Feature: domain Description: ac_ac_CoA_syn Location: 42 7064-42 9002 bp Feature: gene Location: 429412-431082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430015-430636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430015-430636 bp Feature: domain Description: GIIM Note: maturase Location: 430690-430891 bp Feature: domain Description: GIIM Note: maturase Location: 430690-430891 bp Feature: gene Location: 431154-435050 bp Feature: domain Description: PAS_8 Location: 433548-433650 bp Feature: domain Description: PAS_8 Location: 433548-433650 bp Feature: domain Description: CitA Location: 433944-434118 bp Feature: domain Description: CitA Location: 433944-434118 bp Feature: domain Description: BaeS Location: 434253-435039 bp Feature: domain Description: BaeS Location: 4342 53-435039 bp Feature: gene Location: 435264-435713 bp Feature: domain Description: COG5490 Location: 435267-435711 bp Feature: domain Description: COG5490 Location: 4352 67-435711 bp Feature: gene Location: 663063-663686 bp Feature: domain Description: PRK09174 Location: 663069-663678 bp Feature: domain Description: PRK09174 Location: 663069-663678 bp Feature: gene Location: 663690-664178 bp Feature: domain Description: PRK09173 Location: 663702-664176 bp Feature: domain Description: PRK09173 Location: 663702 -664176 bp Feature: gene Location: 664427-666097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665030-665651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665030-665651 bp Feature: domain Description: GIIM Note: maturase Location: 665705-665906 bp Feature: domain Description: GIIM Note: maturase Location: 665705-665906 bp Feature: gene Location: 666104-666253 bp Feature: gene Location: 666304-666441 bp Feature: gene Location: 1702613-1703074 bp Feature: domain Description: Lrp Location: 1702616-1703057 bp Feature: domain Description: Lrp Location: 1702 616-1703057 bp Feature: gene Location: 1703231-1704349 bp Feature: domain Description: Ald Location: 1703234-1704338 bp Feature: domain Description: Ald Location: 17032 34-1704338 bp Feature: gene Location: 1704622-1706292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705225-1705846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17052 2 5-1705846 bp Feature: domain Description: GIIM Note: maturase Location: 1705900-1706101 bp Feature: domain Description: GIIM Note: maturase Location: 1705900-1706101 bp Feature: gene Location: 1706414-1707439 bp Feature: domain Description: GlxA Location: 1707038-1707434 bp Feature: domain Description: GlxA Location: 1707038-1707434 bp Feature: gene Location: 1707594-1708343 bp Feature: domain Description: YdfG Location: 1707597-1708341 bp Feature: domain Description: YdfG Location: 1707597-1708341 bp Feature: gene Location: 1708410-1708958 bp Feature: domain Description: RutF Location: 1708449-1708899 bp Feature: domain Description: RutF Location: 1708449-1708899 bp Feature: gene Location: 1709014-1709304 bp Feature: domain Description: COG5470 Location: 1709023-1709302 bp Feature: domain Description: COG5470 Location: 170902 3-1709302 bp Feature: gene Location: 1709590-1711260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710193-1710814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710193-1710814 bp Feature: domain Description: GIIM Note: maturase Location: 1710868-1711069 bp Feature: domain Description: GIIM Note: maturase Location: 1710868-1711069 bp Feature: gene Location: 1711373-1711813 bp Feature: gene Location: 1711973-1712365 bp Feature: gene Location: 1774684-1777527 bp Feature: domain Description: valS Location: 1774690-1777513 bp Feature: domain Description: valS Location: 1774690-1777513 bp Feature: gene Location: 1777925-1779199 bp Feature: domain Description: FadL Location: 1777997-1779197 bp Feature: domain Description: FadL Location: 1777997-1779197 bp Feature: gene Location: 1779447-1781117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780050-1780671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780050-1780671 bp Feature: domain Description: GIIM Note: maturase Location: 1780725-1780926 bp Feature: domain Description: GIIM Note: maturase Location: 178072 5-178092 6 bp Feature: gene Location: 1781221-1781832 bp Feature: gene Location: 1781852-1782655 bp Feature: domain Description: SLR Location: 1782026-1782455 bp Feature: domain Description: SLR Location: 1782 02 6-1782 455 bp Feature: gene Location: 2579489-2581471 bp Feature: domain Description: KOG0734 Location: 2580224-2581424 bp Feature: domain Description: KOG0734 Location: 2 5802 2 4-2 58142 4 bp Feature: gene Location: 2581586-2582395 bp Feature: domain Description: MPP_MS158 Location: 2581601-2582342 bp Feature: domain Description: MPP_MS158 Location: 2 581601-2 582 342 bp Feature: gene Location: 2582922-2584259 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2583000-2583912 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 583000-2 583912 bp Feature: gene Location: 2584692-2585318 bp Feature: gene Location: 2585483-2586937 bp Feature: domain Description: DUF4041 Location: 2586065-2586230 bp Feature: domain Description: DUF4041 Location: 2 586065-2 5862 30 bp Feature: domain Description: T5orf172 Location: 2586533-2586812 bp Feature: domain Description: T5orf172 Location: 2 586533-2 586812 bp Feature: gene Location: 3883903-3884757 bp Feature: domain Description: LysR Location: 3883909-3884740 bp Feature: domain Description: LysR Location: 3883909-3884740 bp Feature: gene Location: 3884818-3885852 bp Feature: domain Description: YfeH Location: 3884851-3885823 bp Feature: domain Description: YfeH Location: 3884851-388582 3 bp Feature: gene Location: 3885943-3887613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3886546-3887167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3886546-3887167 bp Feature: domain Description: GIIM Note: maturase Location: 3887221-3887422 bp Feature: domain Description: GIIM Note: maturase Location: 38872 2 1-388742 2 bp Feature: gene Location: 3887862-3888332 bp Feature: domain Description: PRK10743 Location: 3887865-3888276 bp Feature: domain Description: PRK10743 Location: 3887865-38882 76 bp Feature: gene Location: 3888579-3889712 bp Feature: domain Description: PldB Location: 3888771-3889671 bp Feature: domain Description: PldB Location: 3888771-3889671 bp Feature: gene Location: 4035666-4036448 bp Feature: gene Location: 4036568-4038724 bp Feature: domain Description: Chb Location: 4036820-4038695 bp Feature: domain Description: Chb Location: 403682 0-4038695 bp Feature: gene Location: 4038731-4040401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4039334-4039955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4039334-4039955 bp Feature: domain Description: GIIM Note: maturase Location: 4040009-4040210 bp Feature: domain Description: GIIM Note: maturase Location: 4040009-40402 10 bp Feature: gene Location: 4040629-4043775 bp Feature: domain Description: AcrB Location: 4040665-4043677 bp Feature: domain Description: AcrB Location: 4040665-4043677 bp Feature: gene Location: 4043802-4044941 bp Feature: domain Description: RND_mfp Location: 4043934-4044894 bp Feature: domain Description: RND_mfp Location: 4043934-4044894 bp Feature: gene Location: 4654159-4654911 bp Feature: domain Description: OmpR Location: 4654186-4654903 bp Feature: domain Description: OmpR Location: 4654186-4654903 bp Feature: gene Location: 4655231-4656841 bp Feature: domain Description: PckA Location: 4655264-4656821 bp Feature: domain Description: PckA Location: 46552 64-465682 1 bp Feature: gene Location: 4657091-4658761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4657694-4658315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4657694-4658315 bp Feature: domain Description: GIIM Note: maturase Location: 4658369-4658570 bp Feature: domain Description: GIIM Note: maturase Location: 4658369-4658570 bp Feature: gene Location: 4658882-4659325 bp Feature: domain Description: PRK09256 Location: 4658900-4659305 bp Feature: domain Description: PRK092 56 Location: 4658900-4659305 bp Feature: gene Location: 4659327-4659938 bp Feature: domain Description: AlkB Location: 4659339-4659915 bp Feature: domain Description: AlkB Location: 4659339-4659915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AsmA (pfam05170), ac_ac_CoA_syn (TIGR01217), RVT-GII, GIIM (pfam08388), PAS_8 (pfam13188), CitA (COG3290), BaeS (COG0642), COG5490 (Uncharacterized protein ), PRK09174 (F0F1 ATP synthase subunit B), PRK09173 (F0F1 ATP synthase subunit B; Validated)
Lrp (COG1522), Ald (COG0686), GlxA (COG4977), YdfG (COG4221), RutF (TIGR03615), COG5470 (Uncharacterized conserved protein, DUF1330 family ), valS (TIGR00422), FadL (COG2067), SLR (sd00010), KOG0734 (KOG0734, AAA+-type ATPase containing the peptidase M41 domain )
MPP_MS158 (cd07404), RVT-UG2, DUF4041 (pfam13250), T5orf172 (smart00974), LysR (COG0583), YfeH (COG0385), PRK10743 (heat shock chaperone IbpA), PldB (COG2267), Chb (COG3525), AcrB (COG0841)
RND_mfp (TIGR01730), OmpR (COG0745), PckA (COG1866), PRK09256 (aminoacyl-tRNA hydrolase), AlkB (COG3145)