myRT

myRT report for GCA_004307975.1_ASM430797v1

Download annotations/find similar RTs

Seq: SITK01000116.1 (27937 bp)
Overview 1 RT 1: 15017-21146 bp Neighborhood of RT #1 [15017, 21146] zinc_ribbon_11 RVT-GII TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 15017-15517 bp Feature: domain Description: zinc_ribbon_11 Location: 15137-15503 bp Feature: domain Description: zinc_ribbon_1 1 Location: 1 51 37-1 5503 bp Feature: gene Location: 15514-15687 bp Feature: gene Location: 15805-16410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15859-16072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5859-1 6072 bp Feature: gene Location: 16639-17415 bp Feature: domain Description: TIGR02646 Location: 16750-17218 bp Feature: domain Description: TIGR02646 Location: 1 6750-1 721 8 bp Feature: gene Location: 17415-19058 bp Feature: domain Description: COG3950 Location: 17622-19005 bp Feature: domain Description: COG3950 Location: 1 7622-1 9005 bp Feature: gene Location: 19058-20074 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19235-19832 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9235-1 9832 bp Feature: gene Location: 20173-20337 bp Feature: gene Location: 20460-21146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_11 (pfam11682), RVT-GII, TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: SITK01000108.1 (3672 bp)
Overview 1 RT 1: 413-2336 bp Neighborhood of RT #1 [413, 2336] DDE_Tnp_IS240 RVT-UG4 Feature: gene Location: 413-679 bp Feature: domain Description: DDE_Tnp_IS240 Location: 419-617 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 419-617 bp Feature: gene Location: 771-923 bp Feature: gene Location: 1258-1548 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1270-1453 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12 70-1453 bp Feature: gene Location: 1710-2189 bp Feature: gene Location: 2205-2336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), RVT-UG4

Seq: SITK01000112.1 (10883 bp)
Overview 1 RT 1: 2794-5841 bp Neighborhood of RT #1 [2794, 5870] PHA02517 RVT-GII GIIM PHA02517 rve_3 Feature: gene Location: 2794-3216 bp Feature: domain Description: PHA02517 Location: 2845-3151 bp Feature: domain Description: PHA02517 Location: 2845-3 151 bp Feature: gene Location: 3514-3690 bp Feature: gene Location: 3811-5334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084-4816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084-4816 bp Feature: domain Description: GIIM Note: maturase Location: 4903-5089 bp Feature: domain Description: GIIM Note: maturase Location: 4903 -5089 bp Feature: gene Location: 5487-5657 bp Feature: domain Description: PHA02517 Location: 5490-5652 bp Feature: domain Description: PHA02517 Location: 5490-5652 bp Feature: gene Location: 5661-5870 bp Feature: domain Description: rve_3 Location: 5664-5841 bp Feature: domain Description: rve_3 Location: 5664-5841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve_3 (pfam13683)