myRT

myRT report for GCA_004310515.1_ASM431051v1

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Seq: SIWH01000004.1 (406382 bp)
Overview 1 RT 1: 335643-341515 bp Neighborhood of RT #1 [335643, 341535] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 335643-335963 bp Feature: domain Description: DUF5375 Location: 335646-335961 bp Feature: domain Description: DUF5375 Location: 335646-335961 bp Feature: gene Location: 335978-338311 bp Feature: domain Description: Prim_Zn_Ribbon Location: 336068-336176 bp Feature: domain Description: Prim_Zn_Ribbon Location: 336068-3361 76 bp Feature: domain Description: COG3378 Location: 336794-338303 bp Feature: domain Description: COG3378 Location: 336794-338303 bp Feature: gene Location: 338900-340531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 339215-339812 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33921 5-33981 2 bp Feature: domain Description: TIR_2 Location: 340136-340496 bp Feature: domain Description: TIR_2 Location: 3401 36-340496 bp Feature: gene Location: 340581-341018 bp Feature: domain Description: HTH_Tnp_1 Location: 340596-340713 bp Feature: domain Description: HTH_Tnp_1 Location: 340596-34071 3 bp Feature: gene Location: 341404-341535 bp Feature: domain Description: HTH_Hin_like Location: 341410-341515 bp Feature: domain Description: HTH_Hin_like Location: 341 41 0-341 51 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569)

Seq: SIWH01000006.1 (314445 bp)
Overview 1 RT 1: 129222-133289 bp Neighborhood of RT #1 [129222, 133387] Tra5 RVT-UG4 DUF2913 Feature: gene Location: 129222-130085 bp Feature: domain Description: Tra5 Location: 129357-130074 bp Feature: domain Description: Tra5 Location: 12 9357-130074 bp Feature: gene Location: 130354-131169 bp Feature: gene Location: 131198-132181 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 131549-131993 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 131549-131993 bp Feature: gene Location: 132335-132469 bp Feature: gene Location: 132782-133387 bp Feature: domain Description: DUF2913 Location: 132809-133289 bp Feature: domain Description: DUF2 913 Location: 132 809-1332 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-UG4, DUF2913 (pfam11140)

Seq: SIWH01000010.1 (165047 bp)
Overview 1 RT 1: 3-4305 bp 2 RT 2: 108985-111332 bp Neighborhood of RT #1 [3, 4907] OmpV RVT-UG4 HTH_28 rve Neighborhood of RT #2 [108985, 111332] RVT-UG4 Feature: gene Location: 3-404 bp Feature: domain Description: OmpV Location: 9-402 bp Feature: domain Description: OmpV Location: 9-402 bp Feature: gene Location: 1004-1801 bp Feature: gene Location: 1820-2812 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2171-2615 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2171-2615 bp Feature: gene Location: 2877-3074 bp Feature: gene Location: 3432-4907 bp Feature: domain Description: HTH_28 Location: 3558-3705 bp Feature: domain Description: HTH_28 Location: 3 558-3 705 bp Feature: domain Description: rve Location: 3939-4305 bp Feature: domain Description: rve Location: 3 93 9-43 05 bp Feature: gene Location: 108985-109143 bp Feature: gene Location: 109213-110091 bp Feature: gene Location: 110117-110461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 110120-110273 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 110120-110273 bp Feature: gene Location: 110500-110664 bp Feature: gene Location: 111168-111332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpV (COG3713), RVT-UG4, HTH_28 (pfam13518), rve (pfam00665)