myRT

myRT report for GCA_004319545.1_ASM431954v1

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Seq: CP036313.1 (5105261 bp)
Overview 1 RT 1: 1227706-1232625 bp 2 RT 2: 1526309-1529806 bp 3 RT 3: 2191616-2197899 bp 4 RT 4: 3598924-3603781 bp 5 RT 5: 3652255-3656242 bp 6 RT 6: 3812934-3819147 bp 7 RT 7: 4714417-4718249 bp Neighborhood of RT #1 [1227706, 1232625] STKc_PknB_like RVT-GII GIIM Neighborhood of RT #2 [1526309, 1529832] RVT-UG28 FIDO Neighborhood of RT #3 [2191616, 2197976] iSH2_PIK3R3 RVT-CRISPR Cas1_I-II-III zf-CHC2 Neighborhood of RT #4 [3598924, 3603906] RVT-GII GIIM Couple_hipA HipA_C HTH_XRE Neighborhood of RT #5 [3652255, 3656253] Avd_like RVT-DGRs Zn_Tnp_IS91 Y2_Tnp integrase_gron integrase_gron Neighborhood of RT #6 [3812934, 3819401] RVT-UG8 RVT-UG3 DDE_5 DDE_Tnp_2 AAA_22 Neighborhood of RT #7 [4714417, 4718323] YafD RVT-GII DDE_5 GIIM Feature: gene Location: 1227706-1227861 bp Feature: gene Location: 1227980-1229518 bp Feature: domain Description: STKc_PknB_like Location: 1228022-1228787 bp Feature: domain Description: STKc_PknB_like Location: 1 228022-1 228787 bp Feature: gene Location: 1229617-1231101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230037-1230652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 230037-1 230652 bp Feature: domain Description: GIIM Note: maturase Location: 1230700-1230901 bp Feature: domain Description: GIIM Note: maturase Location: 1 230700-1 230901 bp Feature: gene Location: 1231192-1231419 bp Feature: gene Location: 1231438-1232625 bp Feature: gene Location: 1526309-1526488 bp Feature: gene Location: 1526589-1526723 bp Feature: gene Location: 1526914-1528410 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1527202-1527838 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1 527202-1 527838 bp Feature: gene Location: 1528700-1528903 bp Feature: gene Location: 1529536-1529832 bp Feature: domain Description: FIDO Location: 1529542-1529806 bp Feature: domain Description: FIDO Location: 1 529542-1 529806 bp Feature: gene Location: 2191616-2192566 bp Feature: domain Description: iSH2_PIK3R3 Location: 2192294-2192477 bp Feature: domain Description: iSH2_PIK3R3 Location: 21 92294-21 92477 bp Feature: gene Location: 2194092-2194295 bp Feature: gene Location: 2194352-2196649 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2194562-2195183 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21 94562-21 951 83 bp Feature: domain Description: Cas1_I-II-III Location: 2195648-2196614 bp Feature: domain Description: Cas1 _I-II-III Location: 21 95648-21 9661 4 bp Feature: gene Location: 2196988-2197365 bp Feature: gene Location: 2197620-2197976 bp Feature: domain Description: zf-CHC2 Location: 2197647-2197899 bp Feature: domain Description: zf-CHC2 Location: 21 97647-21 97899 bp Feature: gene Location: 3598924-3599109 bp Feature: gene Location: 3599561-3600115 bp Feature: gene Location: 3600625-3602109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3601045-3601660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3601 045-3601 660 bp Feature: domain Description: GIIM Note: maturase Location: 3601708-3601909 bp Feature: domain Description: GIIM Note: maturase Location: 3601 708-3601 909 bp Feature: gene Location: 3602288-3603586 bp Feature: domain Description: Couple_hipA Location: 3602408-3602615 bp Feature: domain Description: Couple_hipA Location: 3602408-360261 5 bp Feature: domain Description: HipA_C Location: 3602864-3603500 bp Feature: domain Description: HipA_C Location: 3602864-3603500 bp Feature: gene Location: 3603586-3603906 bp Feature: domain Description: HTH_XRE Location: 3603646-3603781 bp Feature: domain Description: HTH_XRE Location: 3603646-3603781 bp Feature: gene Location: 3652255-3652602 bp Feature: domain Description: Avd_like Location: 3652285-3652591 bp Feature: domain Description: Avd_like Location: 3652285-3652591 bp Feature: gene Location: 3652722-3653051 bp Feature: gene Location: 3653118-3654167 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3653328-3653940 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3653328-3653940 bp Feature: gene Location: 3654254-3655303 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3654257-3654458 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3654257-3654458 bp Feature: domain Description: Y2_Tnp Location: 3654587-3655139 bp Feature: domain Description: Y2_Tnp Location: 3654587-36551 39 bp Feature: gene Location: 3655423-3656253 bp Feature: domain Description: integrase_gron Location: 3655441-3655957 bp Feature: domain Description: integrase_gron Location: 3655441 -3655957 bp Feature: domain Description: integrase_gron Location: 3656014-3656242 bp Feature: domain Description: integrase_gron Location: 365601 4-3656242 bp Feature: gene Location: 3812934-3813170 bp Feature: gene Location: 3813190-3813399 bp Feature: gene Location: 3814074-3816017 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3814569-3815016 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 381 4569-381 501 6 bp Feature: gene Location: 3816010-3816714 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3816016-3816283 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 381 601 6-381 6283 bp Feature: gene Location: 3816968-3818305 bp Feature: domain Description: DDE_5 Location: 3817034-3817757 bp Feature: domain Description: DDE_5 Location: 381 7034-381 7757 bp Feature: domain Description: DDE_Tnp_2 Location: 3817874-3818036 bp Feature: domain Description: DDE_Tnp_2 Location: 381 7874-381 8036 bp Feature: gene Location: 3818739-3819401 bp Feature: domain Description: AAA_22 Location: 3818817-3819147 bp Feature: domain Description: AAA_22 Location: 381 881 7-381 91 47 bp Feature: gene Location: 4714417-4715520 bp Feature: domain Description: YafD Location: 4714462-4715380 bp Feature: domain Description: YafD Location: 471 4462-471 5380 bp Feature: gene Location: 4715604-4715771 bp Feature: gene Location: 4715945-4716304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4716053-4716287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 6053-471 6287 bp Feature: gene Location: 4716450-4717919 bp Feature: domain Description: DDE_5 Location: 4716714-4717218 bp Feature: domain Description: DDE_5 Location: 471 671 4-471 721 8 bp Feature: gene Location: 4718060-4718323 bp Feature: domain Description: GIIM Note: maturase Location: 4718102-4718249 bp Feature: domain Description: GIIM Note: maturase Location: 471 81 02-471 8249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-GII, GIIM (pfam08388), RVT-UG28, FIDO (COG2184), iSH2_PIK3R3 (cd12925), RVT-CRISPR, Cas1_I-II-III (cl00656), zf-CHC2 (pfam01807), Couple_hipA (pfam13657)
HipA_C (pfam07804), HTH_XRE (smart00530), Avd_like (cd16376), RVT-DGRs, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), integrase_gron (TIGR02249), RVT-UG8, RVT-UG3, DDE_5 (pfam13546)
DDE_Tnp_2 (pfam04693), AAA_22 (pfam13401), YafD (COG3021)