myRT

myRT report for GCA_004321915.1_ASM432191v1

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Seq: SCQE01000043.1 (4043 bp)
Overview 1 RT 1: 109-1632 bp Neighborhood of RT #1 [109, 1697] Avd_like RVT-DGRs NikR Feature: gene Location: 109-306 bp Feature: domain Description: Avd_like Location: 145-271 bp Feature: domain Description: Avd_like Location: 1 45-271 bp Feature: gene Location: 349-975 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 352-748 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 352-748 bp Feature: gene Location: 1001-1396 bp Feature: gene Location: 1455-1697 bp Feature: domain Description: NikR Location: 1470-1632 bp Feature: domain Description: NikR Location: 1 470-1 632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, NikR (COG0864)

Seq: SCQE01000079.1 (48596 bp)
Overview 1 RT 1: 44633-48112 bp Neighborhood of RT #1 [44633, 48423] OAFO_sf PRK11869 RVT-Retrons Feature: gene Location: 44633-46447 bp Feature: domain Description: OAFO_sf Location: 44738-46427 bp Feature: domain Description: OAFO_sf Location: 44738-4642 7 bp Feature: gene Location: 46431-47282 bp Feature: domain Description: PRK11869 Location: 46470-47268 bp Feature: domain Description: PRK11869 Location: 46470-472 68 bp Feature: gene Location: 47431-48423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47566-48112 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47566-48112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OAFO_sf (TIGR03710), PRK11869 (2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional), RVT-Retrons

Seq: SCQE01000055.1 (57704 bp)
Overview 1 RT 1: 41330-47425 bp Neighborhood of RT #1 [41330, 47451] Avd_like RVT-DGRs RND_mfp AcrB Feature: gene Location: 41330-41662 bp Feature: domain Description: Avd_like Location: 41348-41657 bp Feature: domain Description: Avd_like Location: 413 48-41657 bp Feature: gene Location: 41699-41872 bp Feature: gene Location: 42004-43059 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42211-42856 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42211-42856 bp Feature: gene Location: 43296-44384 bp Feature: domain Description: RND_mfp Location: 43419-44376 bp Feature: domain Description: RND_mfp Location: 43 419-443 76 bp Feature: gene Location: 44371-47451 bp Feature: domain Description: AcrB Location: 44380-47425 bp Feature: domain Description: AcrB Location: 443 80-47425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, RND_mfp (TIGR01730), AcrB (COG0841)

Seq: SCQE01000090.1 (43786 bp)
Overview 1 RT 1: 13366-15615 bp Neighborhood of RT #1 [13366, 15623] RVT-DGRs nirV Avd_like Feature: gene Location: 13366-13644 bp Feature: gene Location: 13684-13839 bp Feature: gene Location: 13841-14791 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13946-14591 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1394 6-14 591 bp Feature: gene Location: 15096-15272 bp Feature: domain Description: nirV Location: 15102-15204 bp Feature: domain Description: nirV Location: 15102-15204 bp Feature: gene Location: 15288-15623 bp Feature: domain Description: Avd_like Location: 15306-15615 bp Feature: domain Description: Avd_like Location: 15306-15615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, nirV (LOAD_nirV), Avd_like (cd16376)

Seq: SCQE01000009.1 (77072 bp)
Overview 1 RT 1: 69503-75478 bp Neighborhood of RT #1 [69503, 75478] PIN RVT-CRISPR Cas1_I-II-III Feature: gene Location: 69503-69643 bp Feature: gene Location: 69704-70132 bp Feature: domain Description: PIN Location: 69725-70061 bp Feature: domain Description: PIN Location: 69725 -70061 bp Feature: gene Location: 70582-74079 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 71920-72538 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 71920-725 38 bp Feature: domain Description: Cas1_I-II-III Location: 73081-74038 bp Feature: domain Description: Cas1_I-II-III Location: 73081-74038 bp Feature: gene Location: 74063-74455 bp Feature: gene Location: 74621-75478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN (pfam01850), RVT-CRISPR, Cas1_I-II-III (cl00656)