myRT

myRT report for GCA_004322915.1_ASM432291v1

Download annotations/find similar RTs

Seq: SIKO01000016.1 Rhizobium leguminosarum strain SM32 frag_SM32_10, whole genome shotgun sequence (14178 bp)
Overview 1 RT 1: 11880-14175 bp Neighborhood of RT #1 [11880, 14177] Rve GIIM RVT-GII DUF4096 Feature: gene Location: 11880-12146 bp Feature: domain Description: Rve Location: 11907-12141 bp Feature: domain Description: Rve Location: 1 1 907-1 21 41 bp Feature: gene Location: 12185-12547 bp Feature: domain Description: GIIM Note: maturase Location: 12230-12461 bp Feature: domain Description: GIIM Note: maturase Location: 1 2230-1 2461 bp Feature: gene Location: 12679-13443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12883-13429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2883-1 3429 bp Feature: gene Location: 13481-13804 bp Feature: gene Location: 13902-14177 bp Feature: domain Description: DUF4096 Location: 13968-14175 bp Feature: domain Description: DUF4096 Location: 1 3968-1 41 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), GIIM (pfam08388), RVT-GII, DUF4096 (pfam13340)

Seq: SIKO01000001.1 Rhizobium leguminosarum strain SM32 chrom_SM32, whole genome shotgun sequence (5048358 bp)
Overview 1 RT 1: 467484-478667 bp 2 RT 2: 639682-644280 bp 3 RT 3: 1659458-1665544 bp 4 RT 4: 1731423-1739550 bp 5 RT 5: 2813396-2819261 bp 6 RT 6: 3781357-3787487 bp 7 RT 7: 3935697-3945286 bp 8 RT 8: 4557612-4560821 bp Neighborhood of RT #1 [467484, 478669] AsmA ac_ac_CoA_syn RVT-GII GIIM PAS_8 CitA BaeS COG5490 Neighborhood of RT #2 [639682, 644280] PRK09173 IS285 RVT-GII GIIM Neighborhood of RT #3 [1659458, 1665546] Lrp Ald RVT-GII GIIM GlxA YdfG Neighborhood of RT #4 [1731423, 1739750] valS FadL RVT-GII GIIM SLR Neighborhood of RT #5 [2813396, 2819261] CHASE2 CHD RimL RVT-GII GIIM NT_KNTase_like Neighborhood of RT #6 [3781357, 3787528] LysR YfeH RVT-GII GIIM PRK10743 PldB Neighborhood of RT #7 [3935697, 3945333] Chb RVT-GII GIIM AcrB RND_mfp Neighborhood of RT #8 [4557612, 4560832] RVT-UG28 PRK12278 RpmA Feature: gene Location: 467484-469376 bp Feature: domain Description: AsmA Location: 467568-469338 bp Feature: domain Description: AsmA Location: 467568-469338 bp Feature: gene Location: 469652-471604 bp Feature: domain Description: ac_ac_CoA_syn Location: 469664-471602 bp Feature: domain Description: ac_ac_CoA_syn Location: 469664-471602 bp Feature: gene Location: 472779-474038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472971-473592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472 971-473592 bp Feature: domain Description: GIIM Note: maturase Location: 473646-473847 bp Feature: domain Description: GIIM Note: maturase Location: 473646-473847 bp Feature: gene Location: 474110-478006 bp Feature: domain Description: PAS_8 Location: 476504-476606 bp Feature: domain Description: PAS_8 Location: 476504-476606 bp Feature: domain Description: CitA Location: 476900-477074 bp Feature: domain Description: CitA Location: 476900-477074 bp Feature: domain Description: BaeS Location: 477209-477995 bp Feature: domain Description: BaeS Location: 4772 09-477995 bp Feature: gene Location: 478220-478669 bp Feature: domain Description: COG5490 Location: 478223-478667 bp Feature: domain Description: COG5490 Location: 4782 2 3-478667 bp Feature: gene Location: 639682-640170 bp Feature: domain Description: PRK09173 Location: 639694-640168 bp Feature: domain Description: PRK09173 Location: 639694-640168 bp Feature: gene Location: 640542-641738 bp Feature: domain Description: IS285 Location: 640548-641730 bp Feature: domain Description: IS2 85 Location: 640548-641730 bp Feature: gene Location: 642677-643936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642869-643490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642 869-643490 bp Feature: domain Description: GIIM Note: maturase Location: 643544-643745 bp Feature: domain Description: GIIM Note: maturase Location: 643544-643745 bp Feature: gene Location: 643943-644092 bp Feature: gene Location: 644143-644280 bp Feature: gene Location: 1659458-1659919 bp Feature: domain Description: Lrp Location: 1659461-1659902 bp Feature: domain Description: Lrp Location: 1659461-1659902 bp Feature: gene Location: 1660076-1661194 bp Feature: domain Description: Ald Location: 1660079-1661183 bp Feature: domain Description: Ald Location: 1660079-1661183 bp Feature: gene Location: 1662236-1663495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662428-1663049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 42 8-1663049 bp Feature: domain Description: GIIM Note: maturase Location: 1663103-1663304 bp Feature: domain Description: GIIM Note: maturase Location: 1663103-1663304 bp Feature: gene Location: 1663617-1664642 bp Feature: domain Description: GlxA Location: 1664241-1664637 bp Feature: domain Description: GlxA Location: 16642 41-1664637 bp Feature: gene Location: 1664797-1665546 bp Feature: domain Description: YdfG Location: 1664800-1665544 bp Feature: domain Description: YdfG Location: 1664800-1665544 bp Feature: gene Location: 1731423-1734266 bp Feature: domain Description: valS Location: 1731429-1734252 bp Feature: domain Description: valS Location: 173142 9-17342 52 bp Feature: gene Location: 1734664-1735938 bp Feature: domain Description: FadL Location: 1734736-1735936 bp Feature: domain Description: FadL Location: 1734736-1735936 bp Feature: gene Location: 1736953-1738212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737145-1737766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737145-1737766 bp Feature: domain Description: GIIM Note: maturase Location: 1737820-1738021 bp Feature: domain Description: GIIM Note: maturase Location: 173782 0-173802 1 bp Feature: gene Location: 1738316-1738927 bp Feature: gene Location: 1738947-1739750 bp Feature: domain Description: SLR Location: 1739121-1739550 bp Feature: domain Description: SLR Location: 173912 1-1739550 bp Feature: gene Location: 2813396-2815366 bp Feature: domain Description: CHASE2 Location: 2813522-2814332 bp Feature: domain Description: CHASE2 Location: 2 81352 2 -2 814332 bp Feature: domain Description: CHD Location: 2814629-2815190 bp Feature: domain Description: CHD Location: 2 81462 9-2 815190 bp Feature: gene Location: 2815415-2815954 bp Feature: domain Description: RimL Location: 2815463-2815907 bp Feature: domain Description: RimL Location: 2 815463-2 815907 bp Feature: gene Location: 2816136-2817659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2816592-2817213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 816592 -2 8172 13 bp Feature: domain Description: GIIM Note: maturase Location: 2817267-2817468 bp Feature: domain Description: GIIM Note: maturase Location: 2 8172 67-2 817468 bp Feature: gene Location: 2818298-2819083 bp Feature: domain Description: NT_KNTase_like Location: 2818382-2818583 bp Feature: domain Description: NT_KNTase_like Location: 2 818382 -2 818583 bp Feature: gene Location: 2819133-2819261 bp Feature: gene Location: 3781357-3782211 bp Feature: domain Description: LysR Location: 3781363-3782194 bp Feature: domain Description: LysR Location: 3781363-3782 194 bp Feature: gene Location: 3782302-3783306 bp Feature: domain Description: YfeH Location: 3782308-3783277 bp Feature: domain Description: YfeH Location: 3782 308-37832 77 bp Feature: gene Location: 3783397-3784920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3783853-3784474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3783853-3784474 bp Feature: domain Description: GIIM Note: maturase Location: 3784528-3784729 bp Feature: domain Description: GIIM Note: maturase Location: 378452 8-378472 9 bp Feature: gene Location: 3785678-3786148 bp Feature: domain Description: PRK10743 Location: 3785681-3786092 bp Feature: domain Description: PRK10743 Location: 3785681-3786092 bp Feature: gene Location: 3786395-3787528 bp Feature: domain Description: PldB Location: 3786587-3787487 bp Feature: domain Description: PldB Location: 3786587-3787487 bp Feature: gene Location: 3935697-3936479 bp Feature: gene Location: 3936599-3938755 bp Feature: domain Description: Chb Location: 3936851-3938726 bp Feature: domain Description: Chb Location: 3936851-393872 6 bp Feature: gene Location: 3938762-3940285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3939218-3939839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39392 18-3939839 bp Feature: domain Description: GIIM Note: maturase Location: 3939893-3940094 bp Feature: domain Description: GIIM Note: maturase Location: 3939893-3940094 bp Feature: gene Location: 3941021-3944167 bp Feature: domain Description: AcrB Location: 3941057-3944069 bp Feature: domain Description: AcrB Location: 3941057-3944069 bp Feature: gene Location: 3944194-3945333 bp Feature: domain Description: RND_mfp Location: 3944326-3945286 bp Feature: domain Description: RND_mfp Location: 394432 6-39452 86 bp Feature: gene Location: 4557612-4557869 bp Feature: gene Location: 4558016-4558267 bp Feature: gene Location: 4558136-4559707 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 4558415-4559087 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 4558415-4559087 bp Feature: gene Location: 4560211-4560528 bp Feature: domain Description: PRK12278 Location: 4560214-4560520 bp Feature: domain Description: PRK12 2 78 Location: 45602 14-456052 0 bp Feature: gene Location: 4560563-4560832 bp Feature: domain Description: RpmA Location: 4560566-4560821 bp Feature: domain Description: RpmA Location: 4560566-456082 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AsmA (pfam05170), ac_ac_CoA_syn (TIGR01217), RVT-GII, GIIM (pfam08388), PAS_8 (pfam13188), CitA (COG3290), BaeS (COG0642), COG5490 (Uncharacterized protein ), PRK09173 (F0F1 ATP synthase subunit B; Validated), IS285 (COG3328)
Lrp (COG1522), Ald (COG0686), GlxA (COG4977), YdfG (COG4221), valS (TIGR00422), FadL (COG2067), SLR (sd00010), CHASE2 (smart01080), CHD (cd07302), RimL (COG1670)
NT_KNTase_like (cd05403), LysR (COG0583), YfeH (COG0385), PRK10743 (heat shock chaperone IbpA), PldB (COG2267), Chb (COG3525), AcrB (COG0841), RND_mfp (TIGR01730), RVT-UG28, PRK12278 (50S ribosomal protein L21)
RpmA (COG0211)

Seq: SIKO01000022.1 Rhizobium leguminosarum strain SM32 frag_SM32_16, whole genome shotgun sequence (3011 bp)
Overview 1 RT 1: 46-2749 bp Neighborhood of RT #1 [46, 2940] IS285 RVT-GII GIIM Feature: gene Location: 46-1242 bp Feature: domain Description: IS285 Location: 52-1234 bp Feature: domain Description: IS285 Location: 52-123 4 bp Feature: gene Location: 859-2940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873-2494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873 -2494 bp Feature: domain Description: GIIM Note: maturase Location: 2548-2749 bp Feature: domain Description: GIIM Note: maturase Location: 2548-2749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388)

Seq: SIKO01000002.1 Rhizobium leguminosarum strain SM32 plasmid pSM32_Rh01 p_SM32_Rh01, whole genome shotgun sequence (882570 bp)
Overview 1 RT 1: 599564-606827 bp Neighborhood of RT #1 [599564, 606886] ThiF RVT-GII GIIM Peptidases_S8_S53 PAP2_like_1 Feature: gene Location: 599564-600313 bp Feature: domain Description: ThiF Location: 599648-600215 bp Feature: domain Description: ThiF Location: 59964 8-600215 bp Feature: gene Location: 600505-602037 bp Feature: gene Location: 602204-603874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602807-603428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602807-6034 28 bp Feature: domain Description: GIIM Note: maturase Location: 603482-603683 bp Feature: domain Description: GIIM Note: maturase Location: 6034 82-603683 bp Feature: gene Location: 604127-605821 bp Feature: domain Description: Peptidases_S8_S53 Location: 604343-605663 bp Feature: domain Description: Peptidases_S8_S53 Location: 604 34 3-605663 bp Feature: gene Location: 605855-606886 bp Feature: domain Description: PAP2_like_1 Location: 606560-606827 bp Feature: domain Description: PAP2_like_1 Location: 606560-606827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiF (pfam00899), RVT-GII, GIIM (pfam08388), Peptidases_S8_S53 (cl10459), PAP2_like_1 (cd03380)

Seq: SIKO01000007.1 Rhizobium leguminosarum strain SM32 frag_SM32_1, whole genome shotgun sequence (66548 bp)
Overview 1 RT 1: 31971-37739 bp Neighborhood of RT #1 [31971, 37777] fdxN_nitrog COG3293 COG3293 RVT-GII GIIM OafA NodN Feature: gene Location: 31971-32402 bp Feature: domain Description: fdxN_nitrog Location: 32124-32388 bp Feature: domain Description: fdxN_nitrog Location: 32124-32388 bp Feature: gene Location: 32799-33548 bp Feature: domain Description: COG3293 Location: 32805-33129 bp Feature: domain Description: COG3293 Location: 32805 -33129 bp Feature: domain Description: COG3293 Location: 33141-33522 bp Feature: domain Description: COG3293 Location: 33141-335 22 bp Feature: gene Location: 34138-35661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34594-35215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345 94-35 215 bp Feature: domain Description: GIIM Note: maturase Location: 35269-35470 bp Feature: domain Description: GIIM Note: maturase Location: 35 269-35 470 bp Feature: gene Location: 35896-36999 bp Feature: domain Description: OafA Location: 35914-36985 bp Feature: domain Description: OafA Location: 35 914-36985 bp Feature: gene Location: 37286-37777 bp Feature: domain Description: NodN Location: 37310-37739 bp Feature: domain Description: NodN Location: 37310-37739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fdxN_nitrog (TIGR02936), COG3293 (Transposase ), RVT-GII, GIIM (pfam08388), OafA (COG1835), NodN (cd03450)

Seq: SIKO01000006.1 Rhizobium leguminosarum strain SM32 plasmid pSM32_Rh07 p_SM32_Rh07, whole genome shotgun sequence (74861 bp)
Overview 1 RT 1: 270-4634 bp Neighborhood of RT #1 [270, 4634] AbiEi_1 RVT_N RVT-GII GIIM AbiEii Feature: gene Location: 270-1097 bp Feature: domain Description: AbiEi_1 Location: 495-918 bp Feature: domain Description: AbiEi_1 Location: 495-918 bp Feature: gene Location: 1914-3428 bp Feature: domain Description: RVT_N Location: 1938-2139 bp Feature: domain Description: RVT_N Location: 1938-2139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2217-2976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2217-2976 bp Feature: domain Description: GIIM Note: maturase Location: 3051-3273 bp Feature: domain Description: GIIM Note: maturase Location: 3051-3273 bp Feature: gene Location: 3516-4166 bp Feature: domain Description: AbiEii Location: 3543-4041 bp Feature: domain Description: AbiEii Location: 3543-4041 bp Feature: gene Location: 4206-4634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_1 (pfam09407), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AbiEii (pfam08843)