myRT

myRT report for GCA_004331275.1_ASM433127v1

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Seq: SJOG01000007.1 (196566 bp)
Overview 1 RT 1: 84984-90728 bp Neighborhood of RT #1 [84984, 90733] COG5377 RVT_N RVT-GII YkfC LGT_LGT_LGT_TIGR03299 Feature: gene Location: 84984-85889 bp Feature: gene Location: 86106-87182 bp Feature: domain Description: COG5377 Location: 86226-87126 bp Feature: domain Description: COG5377 Location: 86226-871 26 bp Feature: gene Location: 87462-89171 bp Feature: domain Description: RVT_N Location: 87510-87753 bp Feature: domain Description: RVT_N Location: 8751 0-87753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87798-88446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87798-88446 bp Feature: domain Description: YkfC Location: 88578-88752 bp Feature: domain Description: YkfC Location: 88578-88752 bp Feature: gene Location: 89157-89402 bp Feature: gene Location: 89771-90733 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 89789-90728 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 89789-90728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5377 (Phage-related protein, predicted endonuclease ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), LGT_LGT_LGT_TIGR03299

Seq: SJOG01000001.1 (440880 bp)
Overview 1 RT 1: 25028-29146 bp Neighborhood of RT #1 [25028, 29146] COG3617 RVT-Retrons TOPRIM_OLD Feature: gene Location: 25028-25684 bp Feature: domain Description: COG3617 Location: 25073-25187 bp Feature: domain Description: COG3617 Location: 2 5073-2 5187 bp Feature: gene Location: 26008-26400 bp Feature: gene Location: 26646-27743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26781-27507 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 6781-2 7507 bp Feature: gene Location: 27789-28520 bp Feature: domain Description: TOPRIM_OLD Location: 27885-28170 bp Feature: domain Description: TOPRIM_OLD Location: 2 7885-2 8170 bp Feature: gene Location: 28553-29146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3617 (Prophage antirepressor ), RVT-Retrons, TOPRIM_OLD (cd01026)

Seq: SJOG01000006.1 (196605 bp)
Overview 1 RT 1: 110322-119177 bp Neighborhood of RT #1 [110322, 119185] PRK07209 RVT-UG5 RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like HsdM Feature: gene Location: 110322-110453 bp Feature: gene Location: 110584-111873 bp Feature: domain Description: PRK07209 Location: 110605-111871 bp Feature: domain Description: PRK07209 Location: 110605-111871 bp Feature: gene Location: 111995-115237 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 112517-113012 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 112517-113 012 bp Feature: gene Location: 115253-117703 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 115577-116141 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 115577-116141 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 116444-117008 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 116444-117008 bp Feature: gene Location: 117710-119185 bp Feature: domain Description: HsdM Location: 117716-119177 bp Feature: domain Description: HsdM Location: 117716-119177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), RVT-UG5, RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdM (COG0286)