myRT

myRT report for GCA_004337695.1_ASM433769v1

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Seq: SJXJ01000004.1 (286280 bp)
Overview 1 RT 1: 21542-30160 bp Neighborhood of RT #1 [21542, 30165] RVT-GII DUF1565 Beta_helix Beta_helix Fascin Por_Secre_tail Transposase_mut IS285 RVT-GII GIIM CybB Feature: gene Location: 21542-22027 bp Feature: gene Location: 22028-22219 bp Feature: gene Location: 22888-23583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23083-23578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23083-23578 bp Feature: gene Location: 24118-26133 bp Feature: domain Description: DUF1565 Location: 24211-24331 bp Feature: domain Description: DUF1 565 Location: 2421 1 -24331 bp Feature: domain Description: Beta_helix Location: 24439-24976 bp Feature: domain Description: Beta_helix Location: 24439-24976 bp Feature: domain Description: Beta_helix Location: 25003-25216 bp Feature: domain Description: Beta_helix Location: 25003-2521 6 bp Feature: domain Description: Fascin Location: 25519-25867 bp Feature: domain Description: Fascin Location: 2551 9-25867 bp Feature: domain Description: Por_Secre_tail Location: 25933-26128 bp Feature: domain Description: Por_Secre_tail Location: 25933-261 28 bp Feature: gene Location: 26327-26683 bp Feature: domain Description: Transposase_mut Location: 26363-26675 bp Feature: domain Description: Transposase_mut Location: 26363-26675 bp Feature: gene Location: 26954-27523 bp Feature: domain Description: IS285 Location: 26957-27518 bp Feature: domain Description: IS285 Location: 26957-2751 8 bp Feature: gene Location: 27540-27686 bp Feature: gene Location: 28264-29106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28459-29074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28459-29074 bp Feature: gene Location: 29072-29536 bp Feature: domain Description: GIIM Note: maturase Location: 29150-29360 bp Feature: domain Description: GIIM Note: maturase Location: 291 50-29360 bp Feature: gene Location: 29641-30165 bp Feature: domain Description: CybB Location: 29665-30160 bp Feature: domain Description: CybB Location: 29665-301 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF1565 (pfam07602), Beta_helix (pfam13229), Fascin (pfam06268), Por_Secre_tail (TIGR04183), Transposase_mut (pfam00872), IS285 (COG3328), GIIM (pfam08388), CybB (COG3038)

Seq: SJXJ01000003.1 (373210 bp)
Overview 1 RT 1: 132319-141006 bp 2 RT 2: 265346-273378 bp Neighborhood of RT #1 [132319, 141041] RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like TPR_12 TPR TPR_12 HTH_LUXR Neighborhood of RT #2 [265346, 273401] RVT-UG19 cobalto_cobN PRK01077 Feature: gene Location: 132319-135036 bp Feature: gene Location: 135052-136308 bp Feature: gene Location: 136462-137556 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136684-137305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136684-137305 bp Feature: gene Location: 137558-138898 bp Feature: domain Description: Arm-DNA-bind_5 Location: 137576-137831 bp Feature: domain Description: Arm-DNA-bind_5 Location: 137576-137831 bp Feature: domain Description: Phage_int_SAM_5 Location: 138023-138290 bp Feature: domain Description: Phage_int_SAM_5 Location: 13802 3-1382 90 bp Feature: domain Description: INTN1_C_like Location: 138341-138842 bp Feature: domain Description: INTN1_C_like Location: 138341-138842 bp Feature: gene Location: 139386-141041 bp Feature: domain Description: TPR_12 Location: 139653-139836 bp Feature: domain Description: TPR_12 Location: 139653-139836 bp Feature: domain Description: TPR Location: 139881-139953 bp Feature: domain Description: TPR Location: 139881-139953 bp Feature: domain Description: TPR_12 Location: 140001-140199 bp Feature: domain Description: TPR_12 Location: 140001-140199 bp Feature: domain Description: HTH_LUXR Location: 140862-141006 bp Feature: domain Description: HTH_LUXR Location: 140862 -141006 bp Feature: gene Location: 265346-265546 bp Feature: gene Location: 265901-266050 bp Feature: gene Location: 266109-268217 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 266490-266979 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 2 66490-2 66979 bp Feature: gene Location: 268353-272099 bp Feature: domain Description: cobalto_cobN Location: 268356-272085 bp Feature: domain Description: cobalto_cobN Location: 2 68356-2 72 085 bp Feature: gene Location: 272112-273401 bp Feature: domain Description: PRK01077 Location: 272121-273378 bp Feature: domain Description: PRK01077 Location: 2 72 12 1-2 73378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), TPR_12 (pfam13424), TPR (smart00028), HTH_LUXR (smart00421), RVT-UG19, cobalto_cobN (TIGR02257), PRK01077 (cobyrinate a,c-diamide synthase)