myRT

myRT report for GCA_004340925.1_ASM434092v1

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Seq: SLWT01000086.1 (1251 bp)
Overview 1 RT 1: 19-916 bp Neighborhood of RT #1 [19, 1005] RVT-GII HNHc Feature: gene Location: 19-1005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-223 bp Feature: domain Description: HNHc Note: nucleases Location: 778-916 bp Feature: domain Description: HNHc Note: nucleases Location: 778-91 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: SLWT01000043.1 (39773 bp)
Overview 1 RT 1: 37153-39250 bp Neighborhood of RT #1 [37153, 39654] TIGR04076 RVT-GII GIIM Feature: gene Location: 37153-37563 bp Feature: domain Description: TIGR04076 Location: 37159-37483 bp Feature: domain Description: TIGR04076 Location: 37159-37483 bp Feature: gene Location: 37717-38706 bp Feature: gene Location: 38707-39654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38710-38965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38710-38965 bp Feature: domain Description: GIIM Note: maturase Location: 39019-39250 bp Feature: domain Description: GIIM Note: maturase Location: 39019-392 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR04076 (TIGR04076 family protein), RVT-GII, GIIM (pfam08388)

Seq: SLWT01000003.1 (295339 bp)
Overview 1 RT 1: 232251-235385 bp Neighborhood of RT #1 [232251, 235385] F420_ligase RVT-Retrons Feature: gene Location: 232251-233498 bp Feature: domain Description: F420_ligase Location: 232329-233472 bp Feature: domain Description: F420_ligase Location: 23 23 29-23 3 472 bp Feature: gene Location: 233609-233764 bp Feature: gene Location: 233839-234858 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 234004-234559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 4004-23 4559 bp Feature: gene Location: 234706-235161 bp Feature: gene Location: 235251-235385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT F420_ligase (pfam01996), RVT-Retrons

Seq: SLWT01000015.1 (119480 bp)
Overview 1 RT 1: 110516-119365 bp Neighborhood of RT #1 [110516, 119427] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 COG4646 KOG0390 RVT_N RVT-GII Feature: gene Location: 110516-112120 bp Feature: domain Description: SR_TndX_transposase Location: 110540-110954 bp Feature: domain Description: SR_TndX_transposase Location: 11054 0-110954 bp Feature: domain Description: Recombinase Location: 111056-111434 bp Feature: domain Description: Recombinase Location: 111056-1114 34 bp Feature: domain Description: Zn_ribbon_recom Location: 111470-111644 bp Feature: domain Description: Zn_ribbon_recom Location: 1114 70-11164 4 bp Feature: domain Description: DUF4368 Location: 111920-112118 bp Feature: domain Description: DUF4 368 Location: 111920-112118 bp Feature: gene Location: 112139-118084 bp Feature: domain Description: COG4646 Location: 115022-117590 bp Feature: domain Description: COG4 64 6 Location: 115022-117590 bp Feature: domain Description: KOG0390 Location: 117938-118070 bp Feature: domain Description: KOG0390 Location: 117938-118070 bp Feature: gene Location: 118663-119427 bp Feature: domain Description: RVT_N Location: 118708-118951 bp Feature: domain Description: RVT_N Location: 118708-118951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118996-119365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118996-119365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII

Seq: SLWT01000056.1 (20163 bp)
Overview 1 RT 1: 500-7128 bp Neighborhood of RT #1 [500, 7547] RVT-UG2 DUF2971 RVT-Retrons AAA_15 Feature: gene Location: 500-1867 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 755-1568 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 75 5 -15 68 bp Feature: gene Location: 2475-3365 bp Feature: domain Description: DUF2971 Location: 2799-3072 bp Feature: domain Description: DUF2971 Location: 2799-3072 bp Feature: gene Location: 3429-3680 bp Feature: gene Location: 3841-4878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4000-4558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4000-45 5 8 bp Feature: gene Location: 5030-5953 bp Feature: gene Location: 5988-7547 bp Feature: domain Description: AAA_15 Location: 5991-7128 bp Feature: domain Description: AAA_15 Location: 5 991-7128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DUF2971 (pfam11185), RVT-Retrons, AAA_15 (pfam13175)

Seq: SLWT01000023.1 (83091 bp)
Overview 1 RT 1: 81381-82980 bp Neighborhood of RT #1 [81381, 83051] DUF3789 RVT-GII Feature: gene Location: 81381-81515 bp Feature: domain Description: DUF3789 Location: 81393-81486 bp Feature: domain Description: DUF3789 Location: 81393-81486 bp Feature: gene Location: 81599-81748 bp Feature: gene Location: 82257-83051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82590-82980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82590-82980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3789 (pfam12664), RVT-GII