myRT

myRT report for GCA_004341175.1_ASM434117v1

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Seq: SLYN01000018.1 (120589 bp)
Overview 1 RT 1: 22367-27912 bp Neighborhood of RT #1 [22367, 27912] COG3607 HNHc RVT_N RVT-GII GIIM HNHc PRK13357 Feature: gene Location: 22367-22783 bp Feature: domain Description: COG3607 Location: 22385-22769 bp Feature: domain Description: COG3607 Location: 22385-22769 bp Feature: gene Location: 22803-23234 bp Feature: domain Description: HNHc Note: nucleases Location: 22974-23112 bp Feature: domain Description: HNHc Note: nucleases Location: 22974-231 1 2 bp Feature: gene Location: 23877-25643 bp Feature: domain Description: RVT_N Location: 23925-24168 bp Feature: domain Description: RVT_N Location: 23925-241 68 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24225-24879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24225-24879 bp Feature: domain Description: GIIM Note: maturase Location: 24945-25176 bp Feature: domain Description: GIIM Note: maturase Location: 24945-251 76 bp Feature: domain Description: HNHc Note: nucleases Location: 25377-25548 bp Feature: domain Description: HNHc Note: nucleases Location: 25377-25548 bp Feature: gene Location: 25991-27073 bp Feature: domain Description: PRK13357 Location: 26018-27056 bp Feature: domain Description: PRK1 3357 Location: 2601 8-27056 bp Feature: gene Location: 27490-27912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3607 (Predicted lactoylglutathione lyase ), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13357 (branched-chain amino acid aminotransferase; Provisional)

Seq: SLYN01000058.1 (4971 bp)
Overview 1 RT 1: 538-4968 bp Neighborhood of RT #1 [538, 4968] COG3547 PRK03735 RVT-GII GIIM Feature: gene Location: 538-1761 bp Feature: domain Description: COG3547 Location: 565-1609 bp Feature: domain Description: COG3547 Location: 565-1609 bp Feature: gene Location: 1871-2140 bp Feature: domain Description: PRK03735 Location: 1907-2039 bp Feature: domain Description: PRK03735 Location: 1907-2 039 bp Feature: gene Location: 2301-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2556-3249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 556-32 49 bp Feature: domain Description: GIIM Note: maturase Location: 3339-3543 bp Feature: domain Description: GIIM Note: maturase Location: 3339-3543 bp Feature: gene Location: 3749-3991 bp Feature: gene Location: 4843-4968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PRK03735 (cytochrome b6; Provisional), RVT-GII, GIIM (pfam08388)

Seq: SLYN01000067.1 (2711 bp)
Overview 1 RT 1: 799-2446 bp Neighborhood of RT #1 [799, 2568] RVT-GII HNHc Feature: gene Location: 799-2568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1750 bp Feature: domain Description: HNHc Note: nucleases Location: 2305-2446 bp Feature: domain Description: HNHc Note: nucleases Location: 23 05-2446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: SLYN01000003.1 (328381 bp)
Overview 1 RT 1: 319276-324624 bp Neighborhood of RT #1 [319276, 324830] Ugd UDP_GE_SDE_e RVT-GII RVT-UNC YifB RAYT Feature: gene Location: 319276-320652 bp Feature: domain Description: Ugd Location: 319285-320542 bp Feature: domain Description: Ugd Location: 319285-32054 2 bp Feature: gene Location: 320627-321652 bp Feature: domain Description: UDP_GE_SDE_e Location: 320660-321638 bp Feature: domain Description: UDP_GE_SDE_e Location: 320660-321638 bp Feature: gene Location: 321732-322604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321825-322134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321825-322134 bp Feature: gene Location: 322663-323103 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 322963-323095 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 322963-323095 bp Feature: gene Location: 323584-324129 bp Feature: domain Description: YifB Location: 323599-324118 bp Feature: domain Description: YifB Location: 323599-324 118 bp Feature: gene Location: 324246-324830 bp Feature: domain Description: RAYT Location: 324252-324624 bp Feature: domain Description: RAYT Location: 324 252-324 624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ugd (COG1004), UDP_GE_SDE_e (cd05253), RVT-GII, RVT-CRISPR/RVT-GII/RVT-UG25(RVT-UNC), YifB (COG0606), RAYT (COG1943)

Seq: SLYN01000023.1 (74809 bp)
Overview 1 RT 1: 23715-28109 bp Neighborhood of RT #1 [23715, 28144] PHP_HisPPase_Hisj_like RVT-GII COG1787 zf-C4_Topoisom Acetyltransf_1 Feature: gene Location: 23715-24599 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 23814-24513 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 23814-245 13 bp Feature: gene Location: 24779-24910 bp Feature: gene Location: 25407-26261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25662-26238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 662-26238 bp Feature: gene Location: 26949-27677 bp Feature: domain Description: COG1787 Location: 27036-27492 bp Feature: domain Description: COG1787 Location: 27036-27492 bp Feature: domain Description: zf-C4_Topoisom Location: 27567-27669 bp Feature: domain Description: zf-C4_Topoisom Location: 275 67-27669 bp Feature: gene Location: 27698-28144 bp Feature: domain Description: Acetyltransf_1 Location: 27800-28109 bp Feature: domain Description: Acetyltransf_1 Location: 27800-28109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHP_HisPPase_Hisj_like (cd12110), RVT-GII, COG1787 (Endonuclease, HJR/Mrr/RecB family ), zf-C4_Topoisom (pfam01396), Acetyltransf_1 (pfam00583)