myRT

myRT report for GCA_004341915.1_ASM434191v1

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Seq: SLWZ01000002.1 (456840 bp)
Overview 1 RT 1: 31905-39794 bp Neighborhood of RT #1 [31905, 39835] CheY CHASE3 PAS_4 COG4251 RVT-UNC MviM Cupin_6 HTH_ARAC Feature: gene Location: 31905-32345 bp Feature: domain Description: CheY Location: 31917-32295 bp Feature: domain Description: CheY Location: 31 91 7-32295 bp Feature: gene Location: 32353-34182 bp Feature: domain Description: CHASE3 Location: 32383-32977 bp Feature: domain Description: CHASE3 Location: 32383-32977 bp Feature: domain Description: PAS_4 Location: 33067-33397 bp Feature: domain Description: PAS_4 Location: 33067-33397 bp Feature: domain Description: COG4251 Location: 33400-34171 bp Feature: domain Description: COG4251 Location: 33400-341 71 bp Feature: gene Location: 35510-37231 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 35816-36329 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3581 6-36329 bp Feature: gene Location: 37583-38815 bp Feature: domain Description: MviM Location: 37697-38759 bp Feature: domain Description: MviM Location: 37697-38759 bp Feature: gene Location: 38960-39835 bp Feature: domain Description: Cupin_6 Location: 39014-39242 bp Feature: domain Description: Cupin_6 Location: 3901 4-39242 bp Feature: domain Description: HTH_ARAC Location: 39548-39794 bp Feature: domain Description: HTH_ARAC Location: 39548-39794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), CHASE3 (pfam05227), PAS_4 (pfam08448), COG4251 (Bacteriophytochrome (light-regulated signal transduction histidine kinase) ), RVT-UG10/RVT-UG17/RVT-DGRs/RVT-UG25(RVT-UNC), MviM (COG0673), Cupin_6 (pfam12852), HTH_ARAC (smart00342)

Seq: SLWZ01000063.1 (2242 bp)
Overview 1 RT 1: 2-1891 bp Neighborhood of RT #1 [2, 1902] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 2-361 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-182 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-182 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 203-311 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 03-311 bp Feature: gene Location: 445-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1585 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1891 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: SLWZ01000019.1 (173524 bp)
Overview 1 RT 1: 97058-103513 bp Neighborhood of RT #1 [97058, 103551] PRK06241 PRK06241 RVT-GII GIIM SUKH_6 PRK02126 Feature: gene Location: 97058-99484 bp Feature: domain Description: PRK06241 Location: 97064-98030 bp Feature: domain Description: PRK06241 Location: 97064-9803 0 bp Feature: domain Description: PRK06241 Location: 98330-99473 bp Feature: domain Description: PRK06241 Location: 983 3 0-99473 bp Feature: gene Location: 99563-99775 bp Feature: gene Location: 99832-101157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100111-100804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100111-100804 bp Feature: domain Description: GIIM Note: maturase Location: 100873-101083 bp Feature: domain Description: GIIM Note: maturase Location: 100873 -101083 bp Feature: gene Location: 101851-102387 bp Feature: domain Description: SUKH_6 Location: 101944-102346 bp Feature: domain Description: SUKH_6 Location: 101944-1023 46 bp Feature: gene Location: 102523-103551 bp Feature: domain Description: PRK02126 Location: 102556-103513 bp Feature: domain Description: PRK02126 Location: 102556-103 513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06241 (phosphoenolpyruvate synthase; Validated), RVT-GII, GIIM (pfam08388), SUKH_6 (pfam14568), PRK02126 (ribonuclease Z; Provisional)

Seq: SLWZ01000020.1 (170465 bp)
Overview 1 RT 1: 164689-170411 bp Neighborhood of RT #1 [164689, 170464] RVT-GII GIIM Feature: gene Location: 164689-165060 bp Feature: gene Location: 165057-168437 bp Feature: gene Location: 168986-170464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169466-170108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694 66-170108 bp Feature: domain Description: GIIM Note: maturase Location: 170177-170411 bp Feature: domain Description: GIIM Note: maturase Location: 170177-1704 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SLWZ01000010.1 (261123 bp)
Overview 1 RT 1: 1-2014 bp Neighborhood of RT #1 [1, 2014] RVT-GII GIIM PRK12519 Feature: gene Location: 1-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-295 bp Feature: domain Description: GIIM Note: maturase Location: 346-559 bp Feature: domain Description: GIIM Note: maturase Location: 346-5 5 9 bp Feature: gene Location: 1107-1757 bp Feature: domain Description: PRK12519 Location: 1167-1713 bp Feature: domain Description: PRK125 19 Location: 1167-1713 bp Feature: gene Location: 1733-2014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK12519 (RNA polymerase sigma factor; Provisional)

Seq: SLWZ01000031.1 (88810 bp)
Overview 1 RT 1: 84963-88460 bp Neighborhood of RT #1 [84963, 88654] DAP2 RVT-GII GIIM Feature: gene Location: 84963-86156 bp Feature: domain Description: DAP2 Location: 85587-85719 bp Feature: domain Description: DAP2 Location: 85587-85719 bp Feature: gene Location: 86473-86877 bp Feature: gene Location: 87206-88654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87509-88175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87509-88175 bp Feature: domain Description: GIIM Note: maturase Location: 88250-88460 bp Feature: domain Description: GIIM Note: maturase Location: 88250-8846 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DAP2 (COG1506), RVT-GII, GIIM (pfam08388)

Seq: SLWZ01000015.1 (197636 bp)
Overview 1 RT 1: 134951-141775 bp Neighborhood of RT #1 [134951, 141775] RVT-Retrons Feature: gene Location: 134951-135703 bp Feature: gene Location: 135786-136349 bp Feature: gene Location: 136380-138035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 137190-137808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 137 190-137 808 bp Feature: gene Location: 138300-140000 bp Feature: gene Location: 139997-141775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: SLWZ01000064.1 (1821 bp)
Overview 1 RT 1: 299-1622 bp Neighborhood of RT #1 [299, 1690] RVT-GII GIIM Feature: gene Location: 299-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68 3-1343 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1622 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SLWZ01000039.1 (36498 bp)
Overview 1 RT 1: 33075-35849 bp Neighborhood of RT #1 [33075, 35893] RVT-GII GIIM HEPN_RiboL-PSP Feature: gene Location: 33075-33320 bp Feature: gene Location: 33368-33640 bp Feature: gene Location: 33927-34715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33930-34362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339 30-34362 bp Feature: domain Description: GIIM Note: maturase Location: 34431-34641 bp Feature: domain Description: GIIM Note: maturase Location: 34431-34641 bp Feature: gene Location: 34715-35227 bp Feature: gene Location: 35264-35893 bp Feature: domain Description: HEPN_RiboL-PSP Location: 35291-35849 bp Feature: domain Description: HEPN_RiboL-PSP Location: 3529 1-35849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HEPN_RiboL-PSP (pfam18735)