myRT

myRT report for GCA_004342685.1_ASM434268v1

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Seq: SMBZ01000089.1 (3221 bp)
Overview 1 RT 1: 1-1483 bp Neighborhood of RT #1 [1, 1494] RVT-GII Ribonuc_L-PSP SH3_3 Feature: gene Location: 1-780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00-757 bp Feature: gene Location: 767-979 bp Feature: domain Description: Ribonuc_L-PSP Location: 776-974 bp Feature: domain Description: Ribonuc_L-PSP Location: 776-974 bp Feature: gene Location: 1072-1494 bp Feature: domain Description: SH3_3 Location: 1324-1483 bp Feature: domain Description: SH3_3 Location: 1 324-1 483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Ribonuc_L-PSP (pfam01042), SH3_3 (pfam08239)

Seq: SMBZ01000047.1 (30127 bp)
Overview 1 RT 1: 23310-26318 bp Neighborhood of RT #1 [23310, 26344] zf-IS66 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 23310-23540 bp Feature: domain Description: zf-IS66 Location: 23313-23400 bp Feature: domain Description: zf-IS66 Location: 2 3313-2 3400 bp Feature: gene Location: 23627-23842 bp Feature: gene Location: 24058-24834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24262-24808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 62 -2 4808 bp Feature: gene Location: 25020-25313 bp Feature: domain Description: GIIM Note: maturase Location: 25026-25236 bp Feature: domain Description: GIIM Note: maturase Location: 2 502 6-2 52 36 bp Feature: gene Location: 25379-26344 bp Feature: domain Description: DDE_Tnp_IS66 Location: 25403-26189 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 5403-2 6189 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 26225-26318 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 62 2 5-2 6318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: SMBZ01000073.1 (8774 bp)
Overview 1 RT 1: 1-1470 bp Neighborhood of RT #1 [1, 1470] RVT-GII RVT-GII RVT-GII Feature: gene Location: 1-507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247-502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247-502 bp Feature: gene Location: 527-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 9-740 bp Feature: gene Location: 752-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-857 bp Feature: gene Location: 948-1223 bp Feature: gene Location: 1210-1470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SMBZ01000005.1 (101281 bp)
Overview 1 RT 1: 11624-18555 bp Neighborhood of RT #1 [11624, 18602] Bac_Flav_CT_J DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 11624-12619 bp Feature: domain Description: Bac_Flav_CT_J Location: 11630-12596 bp Feature: domain Description: Bac_Flav_CT_J Location: 11630-12596 bp Feature: gene Location: 12623-13255 bp Feature: domain Description: DUF4141 Location: 12641-12794 bp Feature: domain Description: DUF4 14 1 Location: 1264 1-12794 bp Feature: gene Location: 13515-15389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13839-14661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13839-14 661 bp Feature: domain Description: Intron_maturas2 Location: 14793-15012 bp Feature: domain Description: Intron_maturas2 Location: 14 793-15012 bp Feature: domain Description: HNHc Note: nucleases Location: 15192-15360 bp Feature: domain Description: HNHc Note: nucleases Location: 15192-15360 bp Feature: gene Location: 15880-18273 bp Feature: domain Description: Bac_Flav_CT_G Location: 15883-18265 bp Feature: domain Description: Bac_Flav_CT_G Location: 15883-18265 bp Feature: gene Location: 18270-18602 bp Feature: domain Description: DUF4133 Location: 18288-18555 bp Feature: domain Description: DUF4 133 Location: 18288-18555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)

Seq: SMBZ01000099.1 (1569 bp)
Overview 1 RT 1: 2-1544 bp Neighborhood of RT #1 [2, 1567] RVT-GII RVT-GII Feature: gene Location: 2-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206-335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206-335 bp Feature: gene Location: 380-586 bp Feature: gene Location: 842-1567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067-1544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067-15 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SMBZ01000075.1 (7720 bp)
Overview 1 RT 1: 3-3279 bp Neighborhood of RT #1 [3, 3290] RVT-GII RVT-GII GIIM YkuD_2 YkuD Feature: gene Location: 3-725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-723 bp Feature: gene Location: 732-1271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-837 bp Feature: domain Description: GIIM Note: maturase Location: 891-1080 bp Feature: domain Description: GIIM Note: maturase Location: 891-1080 bp Feature: gene Location: 1373-2173 bp Feature: domain Description: YkuD_2 Location: 1574-2063 bp Feature: domain Description: YkuD_2 Location: 1574-206 3 bp Feature: gene Location: 2259-3290 bp Feature: domain Description: YkuD Location: 2880-3279 bp Feature: domain Description: YkuD Location: 2880-3279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YkuD_2 (pfam13645), YkuD (pfam03734)

Seq: SMBZ01000023.1 (52072 bp)
Overview 1 RT 1: 42732-46786 bp Neighborhood of RT #1 [42732, 46788] recomb_XerC RaiA RVT-GII RVT-GII GIIM ZupT Feature: gene Location: 42732-43613 bp Feature: domain Description: recomb_XerC Location: 42747-43611 bp Feature: domain Description: recomb_XerC Location: 427 47 -43611 bp Feature: gene Location: 43628-43969 bp Feature: domain Description: RaiA Location: 43634-43913 bp Feature: domain Description: RaiA Location: 43634-43913 bp Feature: gene Location: 44706-44891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44814-44886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44814-44886 bp Feature: gene Location: 44901-45098 bp Feature: gene Location: 45141-45455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45147-45432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45147 -45432 bp Feature: gene Location: 45537-45893 bp Feature: domain Description: GIIM Note: maturase Location: 45543-45714 bp Feature: domain Description: GIIM Note: maturase Location: 45543-457 14 bp Feature: gene Location: 45970-46788 bp Feature: domain Description: ZupT Location: 46003-46786 bp Feature: domain Description: ZupT Location: 46003-467 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recomb_XerC (TIGR02224), RaiA (COG1544), RVT-GII, GIIM (pfam08388), ZupT (COG0428)

Seq: SMBZ01000017.1 (67886 bp)
Overview 1 RT 1: 5136-8474 bp Neighborhood of RT #1 [5136, 8482] FMN_red RVT-GII RVT-GII YgiN Feature: gene Location: 5136-5657 bp Feature: domain Description: FMN_red Location: 5145-5544 bp Feature: domain Description: FMN_red Location: 5145-5544 bp Feature: gene Location: 5787-6023 bp Feature: gene Location: 6038-6496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6044-6326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6044-6326 bp Feature: gene Location: 6571-7020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6766-7012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6766-7012 bp Feature: gene Location: 7787-8080 bp Feature: gene Location: 8162-8482 bp Feature: domain Description: YgiN Location: 8198-8474 bp Feature: domain Description: YgiN Location: 8 198 -8 474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FMN_red (pfam03358), RVT-GII, YgiN (COG1359)

Seq: SMBZ01000030.1 (45534 bp)
Overview 1 RT 1: 39000-45344 bp Neighborhood of RT #1 [39000, 45532] SusD OMP_RagA_SusC RVT-GII GIIM Feature: gene Location: 39000-40541 bp Feature: domain Description: SusD Location: 39132-40401 bp Feature: domain Description: SusD Location: 39 132-40401 bp Feature: gene Location: 40555-43779 bp Feature: domain Description: OMP_RagA_SusC Location: 40633-43771 bp Feature: domain Description: OMP_RagA_SusC Location: 40633-43771 bp Feature: gene Location: 44249-45532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44465-45083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44465-45083 bp Feature: domain Description: GIIM Note: maturase Location: 45140-45344 bp Feature: domain Description: GIIM Note: maturase Location: 45140-45344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), OMP_RagA_SusC (TIGR04056), RVT-GII, GIIM (pfam08388)

Seq: SMBZ01000010.1 (79150 bp)
Overview 1 RT 1: 75879-79149 bp Neighborhood of RT #1 [75879, 79148] GH3 GH3 osmo_induc_OsmC RVT-GII Feature: gene Location: 75879-77399 bp Feature: domain Description: GH3 Location: 75945-76413 bp Feature: domain Description: GH3 Location: 75945-76413 bp Feature: domain Description: GH3 Location: 76584-77361 bp Feature: domain Description: GH3 Location: 76584-77361 bp Feature: gene Location: 77725-78144 bp Feature: domain Description: osmo_induc_OsmC Location: 77740-78121 bp Feature: domain Description: osmo_induc_OsmC Location: 77740-78121 bp Feature: gene Location: 78822-79148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79017-79149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79017-79149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH3 (pfam03321), osmo_induc_OsmC (TIGR03562), RVT-GII