myRT

myRT report for GCA_004343085.1_ASM434308v1

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Seq: SMDG01000006.1 (229839 bp)
Overview 1 RT 1: 92387-96704 bp Neighborhood of RT #1 [92387, 96715] Peptidase_M78 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UG12 AFP_2 SpoVS Feature: gene Location: 92387-92905 bp Feature: domain Description: Peptidase_M78 Location: 92498-92831 bp Feature: domain Description: Peptidase_M78 Location: 92498-92831 bp Feature: gene Location: 92926-94065 bp Feature: domain Description: Arm-DNA-bind_4 Location: 92959-93094 bp Feature: domain Description: Arm-DNA-bind_4 Location: 92959-93094 bp Feature: domain Description: Phage_int_SAM_3 Location: 93124-93286 bp Feature: domain Description: Phage_int_SAM_3 Location: 931 24-93286 bp Feature: domain Description: INT_ICEBs1_C_like Location: 93448-93991 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 93448-93991 bp Feature: gene Location: 94381-95985 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 94753-95203 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 94753-95203 bp Feature: gene Location: 96034-96195 bp Feature: domain Description: AFP_2 Location: 96106-96178 bp Feature: domain Description: AFP_2 Location: 961 06-961 78 bp Feature: gene Location: 96443-96715 bp Feature: domain Description: SpoVS Location: 96452-96704 bp Feature: domain Description: SpoVS Location: 96452-96704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M78 (pfam06114), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG12, AFP_2 (pfam18815), SpoVS (pfam04232)

Seq: SMDG01000024.1 (83393 bp)
Overview 1 RT 1: 11319-20891 bp Neighborhood of RT #1 [11319, 20938] RVT-GII Intron_maturas2 HNHc RVT-GII GIIM Ftsk_gamma Ftsk_gamma Udk Feature: gene Location: 11319-12365 bp Feature: gene Location: 12447-12830 bp Feature: gene Location: 13422-15239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13692-14517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13692 -14517 bp Feature: domain Description: Intron_maturas2 Location: 14595-14889 bp Feature: domain Description: Intron_maturas2 Location: 14595-14889 bp Feature: domain Description: HNHc Note: nucleases Location: 15036-15210 bp Feature: domain Description: HNHc Note: nucleases Location: 15036-152 10 bp Feature: gene Location: 16218-18092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16518-17223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16518-172 2 3 bp Feature: domain Description: GIIM Note: maturase Location: 17337-17505 bp Feature: domain Description: GIIM Note: maturase Location: 17337-17505 bp Feature: gene Location: 18466-20163 bp Feature: domain Description: Ftsk_gamma Location: 19063-19243 bp Feature: domain Description: Ftsk_gamma Location: 19063-192 43 bp Feature: domain Description: Ftsk_gamma Location: 19396-19531 bp Feature: domain Description: Ftsk_gamma Location: 19396-19531 bp Feature: gene Location: 20558-20938 bp Feature: domain Description: Udk Location: 20603-20891 bp Feature: domain Description: Udk Location: 2 0603-2 0891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), Ftsk_gamma (smart00843), Udk (COG0572)

Seq: SMDG01000012.1 (176081 bp)
Overview 1 RT 1: 133479-140160 bp Neighborhood of RT #1 [133479, 140189] Sigma70_r4 recU RVT-GII YopX PHA02517 Feature: gene Location: 133479-134000 bp Feature: domain Description: Sigma70_r4 Location: 133851-133953 bp Feature: domain Description: Sigma70_r4 Location: 13 3 851-13 3 953 bp Feature: gene Location: 134074-134703 bp Feature: domain Description: recU Location: 134083-134584 bp Feature: domain Description: recU Location: 13 4083 -13 4584 bp Feature: gene Location: 135470-137401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135794-136520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 5794-13 6520 bp Feature: gene Location: 138471-138806 bp Feature: domain Description: YopX Location: 138516-138801 bp Feature: domain Description: YopX Location: 13 8516-13 8801 bp Feature: gene Location: 139539-140189 bp Feature: domain Description: PHA02517 Location: 139554-140160 bp Feature: domain Description: PHA02517 Location: 13 9554-140160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4 (pfam04545), recU (TIGR00648), RVT-GII, YopX (pfam09643), PHA02517 (putative transposase OrfB; Reviewed)