myRT

myRT report for GCA_004343335.1_ASM434333v1

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Seq: SMAS01000018.1 (13471 bp)
Overview 1 RT 1: 4996-10839 bp Neighborhood of RT #1 [4996, 10868] HTH_28 RVT-UG4 TcfC CooC_C Fimbrial_CS1 Feature: gene Location: 4996-5208 bp Feature: domain Description: HTH_28 Location: 5035-5152 bp Feature: domain Description: HTH_28 Location: 5035-51 52 bp Feature: gene Location: 5351-6601 bp Feature: gene Location: 6519-7664 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6858-7314 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6858-731 4 bp Feature: gene Location: 7773-10268 bp Feature: domain Description: TcfC Location: 8586-8778 bp Feature: domain Description: TcfC Location: 8586-8778 bp Feature: domain Description: CooC_C Location: 9933-10206 bp Feature: domain Description: CooC_C Location: 9933-1 0206 bp Feature: gene Location: 10368-10868 bp Feature: domain Description: Fimbrial_CS1 Location: 10440-10839 bp Feature: domain Description: Fimbrial_CS1 Location: 1 0440-1 0839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-UG4, TcfC (pfam16967), CooC_C (pfam15976), Fimbrial_CS1 (pfam04449)

Seq: SMAS01000021.1 (6983 bp)
Overview 1 RT 1: 202-3414 bp Neighborhood of RT #1 [202, 3428] RVT-Retrons PinE Feature: gene Location: 202-378 bp Feature: gene Location: 508-1449 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 667-1213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 667-12 13 bp Feature: gene Location: 1702-2583 bp Feature: gene Location: 2850-3428 bp Feature: domain Description: PinE Location: 2871-3414 bp Feature: domain Description: PinE Location: 2 871-3414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PinE (COG1961)

Seq: SMAS01000002.1 (600728 bp)
Overview 1 RT 1: 418668-423526 bp Neighborhood of RT #1 [418668, 424122] PRK10724 SmpB RVT-UG11 vgr_GE Feature: gene Location: 418668-419144 bp Feature: domain Description: PRK10724 Location: 418680-419142 bp Feature: domain Description: PRK10724 Location: 418680-419142 bp Feature: gene Location: 419256-419738 bp Feature: domain Description: SmpB Location: 419289-419733 bp Feature: domain Description: SmpB Location: 419289-41973 3 bp Feature: gene Location: 420266-421078 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 420443-420896 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 420443 -420896 bp Feature: gene Location: 421722-421946 bp Feature: gene Location: 422449-424122 bp Feature: domain Description: vgr_GE Location: 423379-423526 bp Feature: domain Description: vgr_GE Location: 423 3 79-423 526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, vgr_GE (TIGR01646)