myRT

myRT report for GCA_004345465.1_ASM434546v1

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Seq: SLVS01000033.1 (2315 bp)
Overview 1 RT 1: 3-1914 bp Neighborhood of RT #1 [3, 2255] RVT_N RVT-GII GIIM Feature: gene Location: 3-161 bp Feature: gene Location: 570-2255 bp Feature: domain Description: RVT_N Location: 654-900 bp Feature: domain Description: RVT_N Location: 654-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 91 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SLVS01000014.1 (51769 bp)
Overview 1 RT 1: 2174-9079 bp Neighborhood of RT #1 [2174, 9480] RVT_N RVT-GII DUF772 DDE_Tnp_1_3 DDE_Tnp_1_6 RVT-GII GIIM tiny_TM_bacill SET Feature: gene Location: 2174-2425 bp Feature: gene Location: 4028-4228 bp Feature: gene Location: 4248-4982 bp Feature: domain Description: RVT_N Location: 4296-4542 bp Feature: domain Description: RVT_N Location: 42 96-4542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4596-4965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4596-4965 bp Feature: gene Location: 5085-6629 bp Feature: domain Description: DUF772 Location: 5244-5466 bp Feature: domain Description: DUF772 Location: 52 44-5466 bp Feature: domain Description: DDE_Tnp_1_3 Location: 5847-6096 bp Feature: domain Description: DDE_Tnp_1_3 Location: 5847-6096 bp Feature: domain Description: DDE_Tnp_1_6 Location: 6204-6561 bp Feature: domain Description: DDE_Tnp_1_6 Location: 62 04-6561 bp Feature: gene Location: 6685-7647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6709-7006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6709-7006 bp Feature: domain Description: GIIM Note: maturase Location: 7072-7306 bp Feature: domain Description: GIIM Note: maturase Location: 7072 -7306 bp Feature: gene Location: 8440-8598 bp Feature: domain Description: tiny_TM_bacill Location: 8497-8566 bp Feature: domain Description: tiny_TM_bacill Location: 8497-8566 bp Feature: gene Location: 8875-9480 bp Feature: domain Description: SET Location: 8923-9079 bp Feature: domain Description: SET Location: 892 3-9079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DUF772 (pfam05598), DDE_Tnp_1_3 (pfam13612), DDE_Tnp_1_6 (pfam13751), GIIM (pfam08388), tiny_TM_bacill (TIGR01732), SET (smart00317)

Seq: SLVS01000004.1 (496367 bp)
Overview 1 RT 1: 172395-179478 bp Neighborhood of RT #1 [172395, 179478] OmpR COG3963 RVT-GII GIIM RVT-GII GIIM RVT-GII RVT_N RVT-GII Feature: gene Location: 172395-173081 bp Feature: domain Description: OmpR Location: 172410-173076 bp Feature: domain Description: OmpR Location: 172410-173 076 bp Feature: gene Location: 173138-173695 bp Feature: domain Description: COG3963 Location: 173144-173690 bp Feature: domain Description: COG3 963 Location: 173 144-173 690 bp Feature: gene Location: 174030-174776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174039-174135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17403 9-17413 5 bp Feature: domain Description: GIIM Note: maturase Location: 174201-174435 bp Feature: domain Description: GIIM Note: maturase Location: 174201-17443 5 bp Feature: gene Location: 174892-176136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175096-175750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175096-175750 bp Feature: domain Description: GIIM Note: maturase Location: 175831-176062 bp Feature: domain Description: GIIM Note: maturase Location: 17583 1-176062 bp Feature: gene Location: 176655-176891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176661-176865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176661-176865 bp Feature: gene Location: 177151-177552 bp Feature: domain Description: RVT_N Location: 177199-177445 bp Feature: domain Description: RVT_N Location: 177199-177445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177499-177550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177499-177550 bp Feature: gene Location: 178223-178543 bp Feature: gene Location: 179002-179478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), COG3963 (Phospholipid N-methyltransferase ), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)