myRT

myRT report for GCA_004345605.1_ASM434560v1

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Seq: SLVY01000022.1 (82902 bp)
Overview 1 RT 1: 7896-12062 bp Neighborhood of RT #1 [7896, 12187] TetR_N TetR_C_33 PRK00228 RVT-Retrons DUF1648 SdpI Feature: gene Location: 7896-8567 bp Feature: domain Description: TetR_N Location: 7908-8037 bp Feature: domain Description: TetR_N Location: 7908-8037 bp Feature: domain Description: TetR_C_33 Location: 8124-8523 bp Feature: domain Description: TetR_C_33 Location: 81 24-8523 bp Feature: gene Location: 8580-9188 bp Feature: domain Description: PRK00228 Location: 8622-9174 bp Feature: domain Description: PRK00228 Location: 8622-91 74 bp Feature: gene Location: 9212-10483 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9647-10250 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9647-1 0250 bp Feature: gene Location: 10741-11700 bp Feature: domain Description: DUF1648 Location: 10807-10942 bp Feature: domain Description: DUF1 648 Location: 1 0807-1 0942 bp Feature: gene Location: 11735-12187 bp Feature: domain Description: SdpI Location: 11864-12062 bp Feature: domain Description: SdpI Location: 1 1 864-1 2062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_33, PRK00228 (YqgE/AlgH family protein), RVT-Retrons, DUF1648 (pfam07853), SdpI (pfam13630)

Seq: SLVY01000006.1 (352215 bp)
Overview 1 RT 1: 160501-164963 bp 2 RT 2: 348934-352125 bp Neighborhood of RT #1 [160501, 164963] RVT-GII GIIM Neighborhood of RT #2 [348934, 352139] InsE RVT-GII RVT-GII GIIM HTH_21 PHA02517 Feature: gene Location: 160501-161064 bp Feature: gene Location: 161086-161844 bp Feature: gene Location: 161918-163003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161921-162566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16192 1-162 566 bp Feature: domain Description: GIIM Note: maturase Location: 162635-162863 bp Feature: domain Description: GIIM Note: maturase Location: 162 635-162 863 bp Feature: gene Location: 164117-164632 bp Feature: gene Location: 164436-164963 bp Feature: gene Location: 348934-349068 bp Feature: gene Location: 349207-349512 bp Feature: domain Description: InsE Location: 349231-349483 bp Feature: domain Description: InsE Location: 3492 31-349483 bp Feature: gene Location: 350066-350518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350282-350504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3502 82 -350504 bp Feature: gene Location: 350529-351332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350532-350943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350532 -350943 bp Feature: domain Description: GIIM Note: maturase Location: 351024-351228 bp Feature: domain Description: GIIM Note: maturase Location: 35102 4-3512 2 8 bp Feature: gene Location: 351456-351845 bp Feature: domain Description: HTH_21 Location: 351585-351747 bp Feature: domain Description: HTH_2 1 Location: 351585-351747 bp Feature: gene Location: 351885-352139 bp Feature: domain Description: PHA02517 Location: 351888-352125 bp Feature: domain Description: PHA02 517 Location: 351888-352 12 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed)

Seq: SLVY01000041.1 (3956 bp)
Overview 1 RT 1: 83-3909 bp Neighborhood of RT #1 [83, 3953] DDE_Tnp_1_4 MopB_1 PRK15488 group_II_RT_mat RVT-GII rve_3 Feature: gene Location: 83-1138 bp Feature: domain Description: DDE_Tnp_1_4 Location: 125-1052 bp Feature: domain Description: DDE_Tnp_1_4 Location: 125-1052 bp Feature: gene Location: 1287-3251 bp Feature: domain Description: MopB_1 Location: 1299-2604 bp Feature: domain Description: MopB_1 Location: 1299-2604 bp Feature: domain Description: PRK15488 Location: 2955-3180 bp Feature: domain Description: PRK15488 Location: 2955-3 180 bp Feature: gene Location: 3324-3608 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3336-3378 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 3 3 6-3 3 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3393-3567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 93 -3 567 bp Feature: gene Location: 3654-3953 bp Feature: domain Description: rve_3 Location: 3741-3909 bp Feature: domain Description: rve_3 Location: 3 741-3 909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), MopB_1 (cd02762), PRK15488 (thiosulfate reductase PhsA; Provisional), group_II_RT_mat (TIGR04416), RVT-GII, rve_3 (pfam13683)

Seq: SLVY01000040.1 (5302 bp)
Overview 1 RT 1: 1117-4758 bp Neighborhood of RT #1 [1117, 4769] RES InsE RVT-GII GIIM Tra5 Feature: gene Location: 1117-1701 bp Feature: domain Description: RES Location: 1123-1579 bp Feature: domain Description: RES Location: 1123-1579 bp Feature: gene Location: 1777-2142 bp Feature: domain Description: InsE Location: 1786-2131 bp Feature: domain Description: InsE Location: 1786-2131 bp Feature: gene Location: 2734-3993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950-3610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950-3610 bp Feature: domain Description: GIIM Note: maturase Location: 3694-3904 bp Feature: domain Description: GIIM Note: maturase Location: 3694 -3904 bp Feature: gene Location: 4124-4417 bp Feature: gene Location: 4494-4769 bp Feature: domain Description: Tra5 Location: 4521-4758 bp Feature: domain Description: Tra5 Location: 4 521-4 758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), InsE (COG2963), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)