myRT

myRT report for GCA_004345705.1_ASM434570v1

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Seq: SLWV01000003.1 (250568 bp)
Overview 1 RT 1: 198698-201288 bp Neighborhood of RT #1 [198698, 201338] PRK05803 RVT-GII DDE_Tnp_ISL3 DDE_Tnp_ISL3 Feature: gene Location: 198698-198832 bp Feature: gene Location: 199546-199839 bp Feature: domain Description: PRK05803 Location: 199549-199804 bp Feature: domain Description: PRK05803 Location: 1 99549-1 99804 bp Feature: gene Location: 200054-200488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200081-200351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200081 -200351 bp Feature: gene Location: 200688-200888 bp Feature: gene Location: 201018-201338 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 201024-201195 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 201 024-201 1 95 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 201201-201288 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 201 201 -201 288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05803 (RNA polymerase sporulation sigma factor SigK), RVT-GII, DDE_Tnp_ISL3 (pfam01610)

Seq: SLWV01000016.1 (77847 bp)
Overview 1 RT 1: 7120-12256 bp Neighborhood of RT #1 [7120, 12306] DDE_3 RVT_N RVT-GII RVT-GII GIIM McrA HipB RAYT Feature: gene Location: 7120-7608 bp Feature: domain Description: DDE_3 Location: 7138-7528 bp Feature: domain Description: DDE_3 Location: 7138-752 8 bp Feature: gene Location: 7735-8016 bp Feature: gene Location: 9188-9829 bp Feature: domain Description: RVT_N Location: 9191-9320 bp Feature: domain Description: RVT_N Location: 9191-932 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9377-9812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9377-9812 bp Feature: gene Location: 9920-10843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9926-10013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 6-10013 bp Feature: domain Description: GIIM Note: maturase Location: 10076-10310 bp Feature: domain Description: GIIM Note: maturase Location: 10076-10310 bp Feature: domain Description: McrA Location: 10406-10670 bp Feature: domain Description: McrA Location: 10406-10670 bp Feature: gene Location: 11039-11674 bp Feature: domain Description: HipB Location: 11045-11360 bp Feature: domain Description: HipB Location: 11045-11360 bp Feature: gene Location: 11863-12306 bp Feature: domain Description: RAYT Location: 11875-12256 bp Feature: domain Description: RAYT Location: 11875-12 2 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HipB (COG1396), RAYT (COG1943)

Seq: SLWV01000040.1 (22123 bp)
Overview 1 RT 1: 2627-6349 bp Neighborhood of RT #1 [2627, 6441] Tra5 GIIM RVT-GII HTH_32 HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 2627-3220 bp Feature: domain Description: Tra5 Location: 2645-3062 bp Feature: domain Description: Tra5 Location: 2645-3 062 bp Feature: gene Location: 3398-3820 bp Feature: domain Description: GIIM Note: maturase Location: 3437-3665 bp Feature: domain Description: GIIM Note: maturase Location: 3 43 7-3 665 bp Feature: gene Location: 3880-4866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4153-4858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4153 -4858 bp Feature: gene Location: 5477-5905 bp Feature: domain Description: HTH_32 Location: 5552-5777 bp Feature: domain Description: HTH_3 2 Location: 5552-5777 bp Feature: gene Location: 5932-6441 bp Feature: domain Description: HTH_Tnp_1 Location: 5935-6079 bp Feature: domain Description: HTH_Tnp_1 Location: 593 5-6079 bp Feature: domain Description: HTH_Tnp_1 Location: 6121-6349 bp Feature: domain Description: HTH_Tnp_1 Location: 6121-63 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), GIIM (pfam08388), RVT-GII, HTH_32 (pfam13565), HTH_Tnp_1 (pfam01527)