myRT

myRT report for GCA_004346165.1_ASM434616v1

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Seq: SLZZ01000001.1 (329224 bp)
Overview 1 RT 1: 136531-142960 bp Neighborhood of RT #1 [136531, 142962] VirB4 Amidoligase_2 RVT-GII GIIM GGCT_like NlpD Feature: gene Location: 136531-138441 bp Feature: domain Description: VirB4 Location: 136894-138331 bp Feature: domain Description: VirB4 Location: 1 36894-1 38331 bp Feature: gene Location: 138460-139542 bp Feature: domain Description: Amidoligase_2 Location: 138475-139177 bp Feature: domain Description: Amidoligase_2 Location: 1 38475-1 391 77 bp Feature: gene Location: 139978-141261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140182-140797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 401 82-1 40797 bp Feature: domain Description: GIIM Note: maturase Location: 140857-141088 bp Feature: domain Description: GIIM Note: maturase Location: 1 40857-1 41 088 bp Feature: gene Location: 141355-141858 bp Feature: domain Description: GGCT_like Location: 141376-141673 bp Feature: domain Description: GGCT_like Location: 1 41 376-1 41 673 bp Feature: gene Location: 141865-142962 bp Feature: domain Description: NlpD Location: 142543-142960 bp Feature: domain Description: NlpD Location: 1 42543-1 42960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), Amidoligase_2 (pfam12224), RVT-GII, GIIM (pfam08388), GGCT_like (cl22886), NlpD (COG0739)

Seq: SLZZ01000047.1 (13471 bp)
Overview 1 RT 1: 2956-10405 bp Neighborhood of RT #1 [2956, 10405] RVT-UG3 RVT-UG8 Feature: gene Location: 2956-3195 bp Feature: gene Location: 3394-4911 bp Feature: gene Location: 5234-6679 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5579-6074 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5579-6074 bp Feature: gene Location: 6849-8900 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7401-7839 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7401-7839 bp Feature: gene Location: 9073-10071 bp Feature: gene Location: 10199-10405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT-UG8

Seq: SLZZ01000010.1 (127112 bp)
Overview 1 RT 1: 75829-86761 bp Neighborhood of RT #1 [75829, 86817] YtxK COG4646 RVT-GII HELICc dnaG DUF3991 Toprim_2 Feature: gene Location: 75829-81840 bp Feature: domain Description: YtxK Location: 78310-79087 bp Feature: domain Description: YtxK Location: 783 10-79087 bp Feature: domain Description: COG4646 Location: 79129-81703 bp Feature: domain Description: COG4646 Location: 79129-81703 bp Feature: gene Location: 81901-82437 bp Feature: gene Location: 82492-84522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82927-83653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82927-83 653 bp Feature: gene Location: 84587-85834 bp Feature: domain Description: HELICc Location: 84713-84929 bp Feature: domain Description: HELICc Location: 84713 -84929 bp Feature: gene Location: 85855-86817 bp Feature: domain Description: dnaG Location: 85987-86167 bp Feature: domain Description: dnaG Location: 85987-86167 bp Feature: domain Description: DUF3991 Location: 86230-86425 bp Feature: domain Description: DUF3 991 Location: 8623 0-86425 bp Feature: domain Description: Toprim_2 Location: 86449-86761 bp Feature: domain Description: Toprim_2 Location: 86449-86761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HELICc (smart00490), dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155)

Seq: SLZZ01000039.1 (25028 bp)
Overview 1 RT 1: 4770-9492 bp Neighborhood of RT #1 [4770, 9554] VirD4 RVT-GII KOG4768 HNHc VirD4 HTH_36 Feature: gene Location: 4770-5756 bp Feature: domain Description: VirD4 Location: 4893-5736 bp Feature: domain Description: VirD4 Location: 4 893-5736 bp Feature: gene Location: 5966-6127 bp Feature: gene Location: 6462-8312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6771-7503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6771-7503 bp Feature: domain Description: KOG4768 Location: 7632-7704 bp Feature: domain Description: KOG4 768 Location: 7632-7704 bp Feature: domain Description: HNHc Note: nucleases Location: 8031-8202 bp Feature: domain Description: HNHc Note: nucleases Location: 8031-8202 bp Feature: gene Location: 8360-9286 bp Feature: domain Description: VirD4 Location: 8465-9032 bp Feature: domain Description: VirD4 Location: 84 65-9032 bp Feature: gene Location: 9300-9554 bp Feature: domain Description: HTH_36 Location: 9342-9492 bp Feature: domain Description: HTH_36 Location: 934 2-94 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507), HTH_36 (pfam13730)