myRT

myRT report for GCA_004346705.1_ASM434670v1

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Seq: SMDF01000012.1 (176081 bp)
Overview 1 RT 1: 133479-140160 bp Neighborhood of RT #1 [133479, 140189] Sigma70_r4 recU RVT-GII YopX PHA02517 Feature: gene Location: 133479-134000 bp Feature: domain Description: Sigma70_r4 Location: 133851-133953 bp Feature: domain Description: Sigma70_r4 Location: 1 33851 -1 33953 bp Feature: gene Location: 134074-134703 bp Feature: domain Description: recU Location: 134083-134584 bp Feature: domain Description: recU Location: 1 34083-1 34584 bp Feature: gene Location: 135470-137401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135794-136520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35794-1 36520 bp Feature: gene Location: 138471-138806 bp Feature: domain Description: YopX Location: 138516-138801 bp Feature: domain Description: YopX Location: 1 3851 6-1 38801 bp Feature: gene Location: 139539-140189 bp Feature: domain Description: PHA02517 Location: 139554-140160 bp Feature: domain Description: PHA0251 7 Location: 1 39554-1 401 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4 (pfam04545), recU (TIGR00648), RVT-GII, YopX (pfam09643), PHA02517 (putative transposase OrfB; Reviewed)

Seq: SMDF01000025.1 (83393 bp)
Overview 1 RT 1: 62456-72075 bp Neighborhood of RT #1 [62456, 72075] Udk Ftsk_gamma Ftsk_gamma RVT-GII GIIM RVT-GII Intron_maturas2 HNHc Feature: gene Location: 62456-62836 bp Feature: domain Description: Udk Location: 62501-62789 bp Feature: domain Description: Udk Location: 62 501-62 789 bp Feature: gene Location: 63231-64961 bp Feature: domain Description: Ftsk_gamma Location: 63861-64041 bp Feature: domain Description: Ftsk_gamma Location: 63861-64041 bp Feature: domain Description: Ftsk_gamma Location: 64194-64329 bp Feature: domain Description: Ftsk_gamma Location: 64194-6432 9 bp Feature: gene Location: 65302-67176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65602-66307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65602 -66307 bp Feature: domain Description: GIIM Note: maturase Location: 66421-66589 bp Feature: domain Description: GIIM Note: maturase Location: 6642 1-66589 bp Feature: gene Location: 68155-69864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68317-69142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68317-69142 bp Feature: domain Description: Intron_maturas2 Location: 69220-69514 bp Feature: domain Description: Intron_maturas2 Location: 692 2 0-69514 bp Feature: domain Description: HNHc Note: nucleases Location: 69661-69835 bp Feature: domain Description: HNHc Note: nucleases Location: 69661-69835 bp Feature: gene Location: 70564-70947 bp Feature: gene Location: 71029-72075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Udk (COG0572), Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SMDF01000006.1 (229839 bp)
Overview 1 RT 1: 133125-137379 bp Neighborhood of RT #1 [133125, 137453] SpoVS AFP_2 RVT-UG12 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like Peptidase_M78 Feature: gene Location: 133125-133397 bp Feature: domain Description: SpoVS Location: 133134-133386 bp Feature: domain Description: SpoVS Location: 13 3 13 4-13 3 3 86 bp Feature: gene Location: 133645-133806 bp Feature: domain Description: AFP_2 Location: 133717-133789 bp Feature: domain Description: AFP_2 Location: 13 3 717-13 3 789 bp Feature: gene Location: 133855-135459 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 134227-134677 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 13 4227-13 4677 bp Feature: gene Location: 135775-136914 bp Feature: domain Description: Arm-DNA-bind_4 Location: 135808-135943 bp Feature: domain Description: Arm-DNA-bind_4 Location: 13 5808-13 5943 bp Feature: domain Description: Phage_int_SAM_3 Location: 135973-136135 bp Feature: domain Description: Phage_int_SAM_3 Location: 13 5973 -13 613 5 bp Feature: domain Description: INT_ICEBs1_C_like Location: 136297-136840 bp Feature: domain Description: INT_ICEBs1_C_like Location: 13 6297-13 6840 bp Feature: gene Location: 136935-137453 bp Feature: domain Description: Peptidase_M78 Location: 137046-137379 bp Feature: domain Description: Peptidase_M78 Location: 13 7046-13 73 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVS (pfam04232), AFP_2 (pfam18815), RVT-UG12, Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), Peptidase_M78 (pfam06114)