myRT

myRT report for GCA_004347595.1_ASM434759v1

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Seq: SLTV01000001.1 (5494537 bp)
Overview 1 RT 1: 287313-292601 bp 2 RT 2: 445524-450812 bp 3 RT 3: 1798808-1802457 bp 4 RT 4: 2817991-2823279 bp 5 RT 5: 3681733-3687057 bp 6 RT 6: 3874002-3877599 bp 7 RT 7: 5185993-5190087 bp Neighborhood of RT #1 [287313, 292636] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #2 [445524, 450850] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #3 [1798808, 1802457] RVT-DGRs Neighborhood of RT #4 [2817991, 2823284] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #5 [3681733, 3687057] HTH_17 HTH_17 RVT-UG3 RVT-UG8 Neighborhood of RT #6 [3874002, 3877599] COG2865 RVT_N RVT-GII GIIM Neighborhood of RT #7 [5185993, 5190146] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 287313-289343 bp Feature: domain Description: Bac_Flav_CT_G Location: 287316-289338 bp Feature: domain Description: Bac_Flav_CT_G Location: 28731 6-289338 bp Feature: gene Location: 289536-289742 bp Feature: gene Location: 289922-291622 bp Feature: domain Description: RVT_N Location: 290021-290264 bp Feature: domain Description: RVT_N Location: 290021 -290264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290309-290957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290309-290957 bp Feature: domain Description: GIIM Note: maturase Location: 291008-291242 bp Feature: domain Description: GIIM Note: maturase Location: 291 008-291 242 bp Feature: gene Location: 291625-292215 bp Feature: domain Description: Bac_Flav_CT_G Location: 291742-292198 bp Feature: domain Description: Bac_Flav_CT_G Location: 291 742-2921 98 bp Feature: gene Location: 292256-292636 bp Feature: domain Description: DUF3876 Location: 292337-292601 bp Feature: domain Description: DUF3876 Location: 292337-292601 bp Feature: gene Location: 445524-447557 bp Feature: domain Description: Bac_Flav_CT_G Location: 445527-447552 bp Feature: domain Description: Bac_Flav_CT_G Location: 445527-447552 bp Feature: gene Location: 447750-447956 bp Feature: gene Location: 448136-449836 bp Feature: domain Description: RVT_N Location: 448235-448478 bp Feature: domain Description: RVT_N Location: 448235-448478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448523-449171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448523-4491 71 bp Feature: domain Description: GIIM Note: maturase Location: 449222-449456 bp Feature: domain Description: GIIM Note: maturase Location: 449222-449456 bp Feature: gene Location: 449839-450429 bp Feature: domain Description: Bac_Flav_CT_G Location: 449956-450412 bp Feature: domain Description: Bac_Flav_CT_G Location: 449956-45041 2 bp Feature: gene Location: 450461-450850 bp Feature: domain Description: DUF3876 Location: 450548-450812 bp Feature: domain Description: DUF3876 Location: 450548-45081 2 bp Feature: gene Location: 1798808-1799188 bp Feature: gene Location: 1799185-1799613 bp Feature: gene Location: 1799576-1800763 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1799909-1800536 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 799909-1 800536 bp Feature: gene Location: 1800885-1801022 bp Feature: gene Location: 1801096-1802457 bp Feature: gene Location: 2817991-2818347 bp Feature: domain Description: DUF3876 Location: 2818054-2818324 bp Feature: domain Description: DUF3876 Location: 281 8054-281 8324 bp Feature: gene Location: 2818376-2818969 bp Feature: domain Description: Bac_Flav_CT_G Location: 2818493-2818952 bp Feature: domain Description: Bac_Flav_CT_G Location: 281 8493-281 8952 bp Feature: gene Location: 2818972-2820672 bp Feature: domain Description: RVT_N Location: 2819071-2819314 bp Feature: domain Description: RVT_N Location: 281 9071 -281 931 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2819359-2820007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 9359-2820007 bp Feature: domain Description: GIIM Note: maturase Location: 2820058-2820292 bp Feature: domain Description: GIIM Note: maturase Location: 2820058-2820292 bp Feature: gene Location: 2820852-2821058 bp Feature: gene Location: 2821251-2823284 bp Feature: domain Description: Bac_Flav_CT_G Location: 2821254-2823279 bp Feature: domain Description: Bac_Flav_CT_G Location: 2821 254-2823279 bp Feature: gene Location: 3681733-3682065 bp Feature: domain Description: HTH_17 Location: 3681853-3681985 bp Feature: domain Description: HTH_1 7 Location: 3681 853-3681 985 bp Feature: gene Location: 3682077-3682385 bp Feature: domain Description: HTH_17 Location: 3682221-3682365 bp Feature: domain Description: HTH_1 7 Location: 3682221 -3682365 bp Feature: gene Location: 3682615-3684057 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3683092-3683608 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3683092-3683608 bp Feature: gene Location: 3684048-3686309 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3684660-3685116 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3684660-36851 1 6 bp Feature: gene Location: 3686501-3686638 bp Feature: gene Location: 3686833-3687057 bp Feature: gene Location: 3874002-3874373 bp Feature: domain Description: COG2865 Location: 3874086-3874350 bp Feature: domain Description: COG2865 Location: 3874086-3874350 bp Feature: gene Location: 3874674-3874892 bp Feature: gene Location: 3875011-3876672 bp Feature: domain Description: RVT_N Location: 3875065-3875308 bp Feature: domain Description: RVT_N Location: 3875065-3875308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3875353-3876001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3875353-3876001 bp Feature: domain Description: GIIM Note: maturase Location: 3876052-3876286 bp Feature: domain Description: GIIM Note: maturase Location: 3876052-3876286 bp Feature: gene Location: 3876998-3877303 bp Feature: gene Location: 3877405-3877599 bp Feature: gene Location: 5185993-5187006 bp Feature: domain Description: Bac_Flav_CT_J Location: 5186014-5186977 bp Feature: domain Description: Bac_Flav_CT_J Location: 51 8601 4-51 86977 bp Feature: gene Location: 5187034-5187570 bp Feature: gene Location: 5187563-5189398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187857-5188679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 87857-51 88679 bp Feature: domain Description: Intron_maturas2 Location: 5188838-5189207 bp Feature: domain Description: Intron_maturas2 Location: 51 88838-51 89207 bp Feature: domain Description: HNHc Note: nucleases Location: 5189231-5189372 bp Feature: domain Description: HNHc Note: nucleases Location: 51 89231 -51 89372 bp Feature: gene Location: 5189718-5189879 bp Feature: gene Location: 5189919-5190146 bp Feature: domain Description: DUF4141 Location: 5189934-5190087 bp Feature: domain Description: DUF41 41 Location: 51 89934-51 90087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992), RVT-DGRs, HTH_17 (pfam12728), RVT-UG3, RVT-UG8, COG2865 (Predicted transcriptional regulator, contains HTH domain )
Bac_Flav_CT_J (TIGR03782), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)