myRT

myRT report for GCA_004348425.1_ASM434842v1

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Seq: SMKK01000025.1 (51885 bp)
Overview 1 RT 1: 14992-30055 bp Neighborhood of RT #1 [14992, 30258] VRP1 Neuraminidase TcA_TcB_BD RVT-GII GIIM MarR_2 Feature: gene Location: 14992-16653 bp Feature: gene Location: 16732-26487 bp Feature: domain Description: VRP1 Location: 16969-17602 bp Feature: domain Description: VRP1 Location: 1 6969-1 7602 bp Feature: domain Description: Neuraminidase Location: 21655-22024 bp Feature: domain Description: Neuraminidase Location: 21 655-22024 bp Feature: domain Description: TcA_TcB_BD Location: 25126-25987 bp Feature: domain Description: TcA_TcB_BD Location: 251 26-25987 bp Feature: gene Location: 27422-28891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27764-28460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27764-28460 bp Feature: domain Description: GIIM Note: maturase Location: 28532-28754 bp Feature: domain Description: GIIM Note: maturase Location: 28532-28754 bp Feature: gene Location: 28888-29280 bp Feature: gene Location: 29797-30258 bp Feature: domain Description: MarR_2 Location: 29890-30055 bp Feature: domain Description: MarR_2 Location: 29890-30055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VRP1 (pfam03538), Neuraminidase (pfam18413), TcA_TcB_BD (pfam18276), RVT-GII, GIIM (pfam08388), MarR_2 (pfam12802)

Seq: SMKK01000062.1 (42403 bp)
Overview 1 RT 1: 7729-13625 bp Neighborhood of RT #1 [7729, 13625] HTH_Tnp_4 DDE_Tnp_4 RVT-GII GIIM Feature: gene Location: 7729-8274 bp Feature: gene Location: 8452-9222 bp Feature: domain Description: HTH_Tnp_4 Location: 8557-8704 bp Feature: domain Description: HTH_Tnp_4 Location: 8557-8704 bp Feature: domain Description: DDE_Tnp_4 Location: 8758-9208 bp Feature: domain Description: DDE_Tnp_4 Location: 8758-92 08 bp Feature: gene Location: 9392-10783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9722-10352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972 2 -10352 bp Feature: domain Description: GIIM Note: maturase Location: 10439-10646 bp Feature: domain Description: GIIM Note: maturase Location: 10439-10646 bp Feature: gene Location: 12034-12312 bp Feature: gene Location: 12297-13625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), RVT-GII, GIIM (pfam08388)

Seq: SMKK01000436.1 (3289 bp)
Overview 1 RT 1: 375-2618 bp Neighborhood of RT #1 [375, 2680] CRISPR_Cas2 Cas_Cas1 RVT-CRISPR Feature: gene Location: 375-656 bp Feature: domain Description: CRISPR_Cas2 Location: 396-597 bp Feature: domain Description: CRISPR_Cas2 Location: 3 96-597 bp Feature: gene Location: 661-1674 bp Feature: domain Description: Cas_Cas1 Location: 691-1528 bp Feature: domain Description: Cas_Cas1 Location: 691-1528 bp Feature: gene Location: 1676-2680 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2027-2618 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2027-2618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), Cas_Cas1 (pfam01867), RVT-CRISPR

Seq: SMKK01000474.1 (2418 bp)
Overview 1 RT 1: 82-2415 bp Neighborhood of RT #1 [82, 2415] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 82-1887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 3-1138 bp Feature: domain Description: Intron_maturas2 Location: 1237-1471 bp Feature: domain Description: Intron_maturas2 Location: 1237-14 71 bp Feature: domain Description: HNHc Note: nucleases Location: 1639-1822 bp Feature: domain Description: HNHc Note: nucleases Location: 1639-1822 bp Feature: gene Location: 2191-2415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)