myRT

myRT report for GCA_004348775.1_ASM434877v1

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Seq: PUJX01000029.1 (59403 bp)
Overview 1 RT 1: 11506-19467 bp Neighborhood of RT #1 [11506, 19467] PRK09694 RVT-Retrons ABC_ATPase Feature: gene Location: 11506-14223 bp Feature: domain Description: PRK09694 Location: 11512-13876 bp Feature: domain Description: PRK09694 Location: 1 1 51 2-1 3876 bp Feature: gene Location: 14873-15127 bp Feature: gene Location: 15706-16692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15853-16423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5853-1 6423 bp Feature: gene Location: 16696-18036 bp Feature: domain Description: ABC_ATPase Location: 16753-17479 bp Feature: domain Description: ABC_ATPase Location: 1 6753-1 7479 bp Feature: gene Location: 18436-19467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09694 (CRISPR-associated helicase/endonuclease Cas3), RVT-Retrons, ABC_ATPase (pfam09818)

Seq: PUJX01000019.1 (101803 bp)
Overview 1 RT 1: 74828-77196 bp 2 RT 2: 99096-101689 bp Neighborhood of RT #1 [74828, 77204] RVT-GII GIIM IS285 Neighborhood of RT #2 [99096, 101715] PRK09010 RVT-GII Feature: gene Location: 74828-75058 bp Feature: gene Location: 75162-75326 bp Feature: gene Location: 75655-76629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75859-76504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75859-76504 bp Feature: gene Location: 76556-76915 bp Feature: domain Description: GIIM Note: maturase Location: 76595-76799 bp Feature: domain Description: GIIM Note: maturase Location: 76595-76799 bp Feature: gene Location: 77037-77204 bp Feature: domain Description: IS285 Location: 77058-77196 bp Feature: domain Description: IS2 85 Location: 77058-77196 bp Feature: gene Location: 99096-99293 bp Feature: gene Location: 99640-100170 bp Feature: domain Description: PRK09010 Location: 99643-100168 bp Feature: domain Description: PRK09010 Location: 99643-100168 bp Feature: gene Location: 101083-101715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101119-101689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101119-101689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS285 (COG3328), PRK09010 (single-stranded DNA-binding protein; Provisional)

Seq: PUJX01000048.1 (21729 bp)
Overview 1 RT 1: 20505-21612 bp Neighborhood of RT #1 [20505, 21641] RVT-UG17 Feature: gene Location: 20505-20948 bp Feature: gene Location: 20903-21211 bp Feature: gene Location: 21261-21641 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 21264-21612 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 21264-21612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17

Seq: PUJX01000147.1 (271 bp)
Overview 1 RT 1: 1-121 bp Neighborhood of RT #1 [1, 270] RVT-GII Feature: gene Location: 1-270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJX01000028.1 (59512 bp)
Overview 1 RT 1: 8082-11257 bp Neighborhood of RT #1 [8082, 11257] OYE_like_5_FMN RVT_N RVT-GII GIIM Feature: gene Location: 8082-8789 bp Feature: domain Description: OYE_like_5_FMN Location: 8223-8775 bp Feature: domain Description: OYE_like_5 _FMN Location: 8223-8775 bp Feature: gene Location: 9274-9759 bp Feature: domain Description: RVT_N Location: 9484-9691 bp Feature: domain Description: RVT_N Location: 9484-9691 bp Feature: gene Location: 9816-10661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9819-10395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9819-10395 bp Feature: domain Description: GIIM Note: maturase Location: 10446-10653 bp Feature: domain Description: GIIM Note: maturase Location: 10446-1065 3 bp Feature: gene Location: 10716-10868 bp Feature: gene Location: 11114-11257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OYE_like_5_FMN (cd04747), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PUJX01000060.1 (10176 bp)
Overview 1 RT 1: 2791-5511 bp Neighborhood of RT #1 [2791, 5511] RVT-GII COG3547 Feature: gene Location: 2791-3096 bp Feature: gene Location: 3221-3388 bp Feature: gene Location: 3300-4733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3684-4371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 84-4371 bp Feature: gene Location: 4906-5307 bp Feature: domain Description: COG3547 Location: 4924-5266 bp Feature: domain Description: COG3547 Location: 4924-526 6 bp Feature: gene Location: 5350-5511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: PUJX01000032.1 (51352 bp)
Overview 1 RT 1: 27543-30357 bp Neighborhood of RT #1 [27543, 30357] RVT-GII GIIM Feature: gene Location: 27543-27890 bp Feature: gene Location: 28090-28278 bp Feature: gene Location: 28344-29540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28548-29151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28548-29151 bp Feature: domain Description: GIIM Note: maturase Location: 29235-29451 bp Feature: domain Description: GIIM Note: maturase Location: 29235-29451 bp Feature: gene Location: 29800-30054 bp Feature: gene Location: 30115-30357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUJX01000051.1 (15211 bp)
Overview 1 RT 1: 2067-4484 bp Neighborhood of RT #1 [2067, 4522] DDE_Tnp_1_3 RVT-GII group_II_RT_mat antidote_CC2985 Feature: gene Location: 2067-2387 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2070-2376 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2070-2376 bp Feature: gene Location: 2518-2751 bp Feature: gene Location: 2984-3526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3131-3209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3131-3209 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3218-3398 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3218 -3398 bp Feature: gene Location: 3798-4001 bp Feature: gene Location: 4262-4522 bp Feature: domain Description: antidote_CC2985 Location: 4277-4484 bp Feature: domain Description: antidote_CC298 5 Location: 4277-448 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-GII, group_II_RT_mat (TIGR04416), antidote_CC2985 (TIGR02606)

Seq: PUJX01000093.1 (1434 bp)
Overview 1 RT 1: 46-1429 bp Neighborhood of RT #1 [46, 1431] RVT-GII Feature: gene Location: 46-177 bp Feature: gene Location: 223-420 bp Feature: gene Location: 592-1431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII