myRT

myRT report for GCA_004348985.1_ASM434898v1

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Seq: SMKW01000232.1 (1121 bp)
Overview 1 RT 1: 97-1087 bp Neighborhood of RT #1 [97, 1119] RVT-GII GIIM HNH Feature: gene Location: 97-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 03-373 bp Feature: domain Description: GIIM Note: maturase Location: 424-658 bp Feature: domain Description: GIIM Note: maturase Location: 424-658 bp Feature: domain Description: HNH Note: nucleases Location: 988-1087 bp Feature: domain Description: HNH Note: nucleases Location: 988-1 087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: SMKW01000153.1 (10002 bp)
Overview 1 RT 1: 7037-8778 bp Neighborhood of RT #1 [7037, 8801] DDE_5 COG5659 RVT-GII Feature: gene Location: 7037-7582 bp Feature: domain Description: DDE_5 Location: 7070-7571 bp Feature: domain Description: DDE_5 Location: 7070-7571 bp Feature: gene Location: 7583-8290 bp Feature: domain Description: COG5659 Location: 7589-8090 bp Feature: domain Description: COG5659 Location: 7589-8090 bp Feature: gene Location: 8529-8801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8649-8778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8649-8778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), COG5659 (SRSO17 transposase ), RVT-GII

Seq: SMKW01000221.1 (1288 bp)
Overview 1 RT 1: 554-1286 bp Neighborhood of RT #1 [554, 1285] RVT_N RVT-GII Feature: gene Location: 554-1285 bp Feature: domain Description: RVT_N Location: 620-860 bp Feature: domain Description: RVT_N Location: 620-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SMKW01000201.1 (1937 bp)
Overview 1 RT 1: 1-1781 bp Neighborhood of RT #1 [1, 1855] RVT-GII GIIM Feature: gene Location: 1-174 bp Feature: gene Location: 338-493 bp Feature: gene Location: 593-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 809-1466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 809-14 66 bp Feature: domain Description: GIIM Note: maturase Location: 1550-1781 bp Feature: domain Description: GIIM Note: maturase Location: 1550-1781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SMKW01000197.1 (2524 bp)
Overview 1 RT 1: 483-1978 bp Neighborhood of RT #1 [483, 2430] RVT_N RVT-GII GIIM Feature: gene Location: 483-635 bp Feature: gene Location: 673-2430 bp Feature: domain Description: RVT_N Location: 733-973 bp Feature: domain Description: RVT_N Location: 733-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1978 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SMKW01000065.1 (52926 bp)
Overview 1 RT 1: 26817-31461 bp Neighborhood of RT #1 [26817, 31472] IS285 COG3464 RVT-GII KOG4768 CitB COG3464 Feature: gene Location: 26817-27395 bp Feature: domain Description: IS285 Location: 26820-27381 bp Feature: domain Description: IS285 Location: 26 820-27381 bp Feature: gene Location: 27494-28366 bp Feature: domain Description: COG3464 Location: 27608-28196 bp Feature: domain Description: COG346 4 Location: 276 08-28196 bp Feature: gene Location: 28727-29284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28988-29171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28988-29171 bp Feature: gene Location: 29699-30505 bp Feature: domain Description: KOG4768 Location: 29717-30479 bp Feature: domain Description: KOG476 8 Location: 29717-30479 bp Feature: gene Location: 30462-31472 bp Feature: domain Description: CitB Location: 30729-30861 bp Feature: domain Description: CitB Location: 30729-3086 1 bp Feature: domain Description: COG3464 Location: 30897-31461 bp Feature: domain Description: COG346 4 Location: 30897-3146 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), COG3464 (Transposase ), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), CitB (TIGR02484)

Seq: SMKW01000092.1 (35501 bp)
Overview 1 RT 1: 162-2146 bp Neighborhood of RT #1 [162, 2146] RVT-GII GIIM COG4584 COG3464 Feature: gene Location: 162-878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186-429 bp Feature: domain Description: GIIM Note: maturase Location: 498-720 bp Feature: domain Description: GIIM Note: maturase Location: 498-7 20 bp Feature: gene Location: 883-1788 bp Feature: domain Description: COG4584 Location: 1105-1363 bp Feature: domain Description: COG4584 Location: 1105-1363 bp Feature: domain Description: COG3464 Location: 1528-1780 bp Feature: domain Description: COG3464 Location: 1528-17 80 bp Feature: gene Location: 1859-2146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), COG3464 (Transposase )

Seq: SMKW01000169.1 (7276 bp)
Overview 1 RT 1: 60-7274 bp Neighborhood of RT #1 [60, 7274] RVT_N RVT-GII IS285 Feature: gene Location: 60-890 bp Feature: domain Description: RVT_N Location: 150-390 bp Feature: domain Description: RVT_N Location: 150-390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-8 22 bp Feature: gene Location: 1565-1798 bp Feature: domain Description: IS285 Location: 1568-1778 bp Feature: domain Description: IS28 5 Location: 1568 -1778 bp Feature: gene Location: 2016-7274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, IS285 (COG3328)

Seq: SMKW01000071.1 (49597 bp)
Overview 1 RT 1: 46325-49473 bp Neighborhood of RT #1 [46325, 49538] IS285 COG3464 RVT-GII Feature: gene Location: 46325-47290 bp Feature: domain Description: IS285 Location: 46331-47234 bp Feature: domain Description: IS285 Location: 46331-47234 bp Feature: gene Location: 47461-48234 bp Feature: domain Description: COG3464 Location: 47503-48181 bp Feature: domain Description: COG3464 Location: 47503-48181 bp Feature: gene Location: 48753-49538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49089-49473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 089 -49 473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), COG3464 (Transposase ), RVT-GII

Seq: SMKW01000139.1 (14499 bp)
Overview 1 RT 1: 11681-14340 bp Neighborhood of RT #1 [11681, 14498] DDE_Tnp_Tn3 COG3464 RVT-GII GIIM Feature: gene Location: 11681-12505 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 11687-12431 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 11687-12431 bp Feature: gene Location: 12890-13783 bp Feature: domain Description: COG3464 Location: 13520-13775 bp Feature: domain Description: COG3464 Location: 13520-13775 bp Feature: gene Location: 13800-14498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13809-14049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13809-14049 bp Feature: domain Description: GIIM Note: maturase Location: 14118-14340 bp Feature: domain Description: GIIM Note: maturase Location: 14118-14340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), COG3464 (Transposase ), RVT-GII, GIIM (pfam08388)