myRT

myRT report for GCA_004349895.1_ASM434989v1

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Seq: SCWT01000013.1 (140182 bp)
Overview 1 RT 1: 85833-91239 bp Neighborhood of RT #1 [85833, 91244] PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 85833-86507 bp Feature: domain Description: PRK00024 Location: 85836-86505 bp Feature: domain Description: PRK00024 Location: 85836-86505 bp Feature: gene Location: 87325-87453 bp Feature: gene Location: 87679-89361 bp Feature: domain Description: RVT_N Location: 87688-87931 bp Feature: domain Description: RVT_N Location: 87688-87931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87979-88630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87979-88630 bp Feature: domain Description: GIIM Note: maturase Location: 88708-88936 bp Feature: domain Description: GIIM Note: maturase Location: 88708-88936 bp Feature: domain Description: HNHc Note: nucleases Location: 89164-89320 bp Feature: domain Description: HNHc Note: nucleases Location: 891 64-89320 bp Feature: gene Location: 89573-90781 bp Feature: domain Description: PRK05579 Location: 89579-90773 bp Feature: domain Description: PRK05579 Location: 89579-90773 bp Feature: gene Location: 90789-91244 bp Feature: domain Description: dut Location: 90795-91239 bp Feature: domain Description: dut Location: 90795-91 239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)

Seq: SCWT01000008.1 (189079 bp)
Overview 1 RT 1: 138-3702 bp Neighborhood of RT #1 [138, 3866] RVT-UG2 PRK06333 HxlR Feature: gene Location: 138-1484 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 387-1173 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 387-1173 bp Feature: gene Location: 1983-3251 bp Feature: domain Description: PRK06333 Location: 1989-3246 bp Feature: domain Description: PRK06333 Location: 1989-32 46 bp Feature: gene Location: 3360-3866 bp Feature: domain Description: HxlR Location: 3384-3702 bp Feature: domain Description: HxlR Location: 3384-3702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: SCWT01000014.1 (138664 bp)
Overview 1 RT 1: 71776-82073 bp Neighborhood of RT #1 [71776, 82084] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71776-73629 bp Feature: domain Description: PRK05658 Location: 71788-73627 bp Feature: domain Description: PRK05658 Location: 71788-73 627 bp Feature: gene Location: 73736-77473 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73844-74501 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73 844-74501 bp Feature: domain Description: PRK09776 Location: 74714-75185 bp Feature: domain Description: PRK09776 Location: 74714-75185 bp Feature: domain Description: PAS Location: 75242-75767 bp Feature: domain Description: PAS Location: 75242-75767 bp Feature: domain Description: PRK10060 Location: 75776-77423 bp Feature: domain Description: PRK10060 Location: 75776-77423 bp Feature: gene Location: 78554-80239 bp Feature: domain Description: RVT_N Location: 78611-78851 bp Feature: domain Description: RVT_N Location: 78611-78851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78899-79535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78899-7953 5 bp Feature: domain Description: GIIM Note: maturase Location: 79589-79820 bp Feature: domain Description: GIIM Note: maturase Location: 79589-79820 bp Feature: domain Description: HNH Note: nucleases Location: 80072-80210 bp Feature: domain Description: HNH Note: nucleases Location: 80072-80210 bp Feature: gene Location: 80567-80704 bp Feature: gene Location: 80963-82084 bp Feature: domain Description: COG3177 Location: 80981-82073 bp Feature: domain Description: COG3 177 Location: 80981-82073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: SCWT01000057.1 (38126 bp)
Overview 1 RT 1: 2-3202 bp Neighborhood of RT #1 [2, 3202] DUF772 RVT-GII GIIM Feature: gene Location: 2-634 bp Feature: domain Description: DUF772 Location: 143-338 bp Feature: domain Description: DUF772 Location: 14 3-338 bp Feature: gene Location: 1023-2291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236-1893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236-1893 bp Feature: domain Description: GIIM Note: maturase Location: 1971-2193 bp Feature: domain Description: GIIM Note: maturase Location: 1971-2193 bp Feature: gene Location: 2441-2839 bp Feature: gene Location: 3023-3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)