myRT

myRT report for GCA_004349995.1_ASM434999v1

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Seq: SCXA01000008.1 (231161 bp)
Overview 1 RT 1: 145980-156286 bp 2 RT 2: 172544-181382 bp Neighborhood of RT #1 [145980, 156288] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172544, 181411] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 145980-147101 bp Feature: domain Description: COG3177 Location: 145998-147090 bp Feature: domain Description: COG31 77 Location: 1 45998-1 47090 bp Feature: gene Location: 147360-147497 bp Feature: gene Location: 147825-149510 bp Feature: domain Description: RVT_N Location: 147882-148122 bp Feature: domain Description: RVT_N Location: 1 47882-1 481 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148170-148806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 481 70-1 48806 bp Feature: domain Description: GIIM Note: maturase Location: 148860-149091 bp Feature: domain Description: GIIM Note: maturase Location: 1 48860-1 49091 bp Feature: domain Description: HNH Note: nucleases Location: 149343-149481 bp Feature: domain Description: HNH Note: nucleases Location: 1 49343-1 49481 bp Feature: gene Location: 150591-154328 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150699-151356 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 50699-1 51 356 bp Feature: domain Description: PRK09776 Location: 151569-152040 bp Feature: domain Description: PRK09776 Location: 1 51 569-1 52040 bp Feature: domain Description: PAS Location: 152130-152622 bp Feature: domain Description: PAS Location: 1 521 30-1 52622 bp Feature: domain Description: PRK10060 Location: 152631-154278 bp Feature: domain Description: PRK1 0060 Location: 1 52631 -1 54278 bp Feature: gene Location: 154435-156288 bp Feature: domain Description: PRK05658 Location: 154447-156286 bp Feature: domain Description: PRK05658 Location: 1 54447-1 56286 bp Feature: gene Location: 172544-173758 bp Feature: domain Description: PRK10770 Location: 172556-173750 bp Feature: domain Description: PRK1 0770 Location: 1 72556-1 73750 bp Feature: gene Location: 173817-176606 bp Feature: domain Description: LptD Location: 174012-176592 bp Feature: domain Description: LptD Location: 1 7401 2-1 76592 bp Feature: gene Location: 176739-178451 bp Feature: domain Description: RVT_N Location: 176796-177039 bp Feature: domain Description: RVT_N Location: 1 76796-1 77039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177084-177720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 77084-1 77720 bp Feature: domain Description: YkfC Location: 177930-178080 bp Feature: domain Description: YkfC Location: 1 77930-1 78080 bp Feature: domain Description: HNH Note: nucleases Location: 178257-178395 bp Feature: domain Description: HNH Note: nucleases Location: 1 78257-1 78395 bp Feature: gene Location: 179724-180740 bp Feature: domain Description: COG3178 Location: 179727-180726 bp Feature: domain Description: COG31 78 Location: 1 79727-1 80726 bp Feature: gene Location: 180737-181411 bp Feature: domain Description: NTP_transferase_like_1 Location: 180743-181382 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 80743-1 81 382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: SCXA01000042.1 (84639 bp)
Overview 1 RT 1: 34933-39019 bp Neighborhood of RT #1 [34933, 39102] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34933-35112 bp Feature: gene Location: 35296-35694 bp Feature: gene Location: 35844-37112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36057-36714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36057-36714 bp Feature: domain Description: GIIM Note: maturase Location: 36792-37014 bp Feature: domain Description: GIIM Note: maturase Location: 36792 -37014 bp Feature: gene Location: 37501-38133 bp Feature: domain Description: DUF772 Location: 37642-37837 bp Feature: domain Description: DUF772 Location: 37642 -37837 bp Feature: gene Location: 38275-39102 bp Feature: domain Description: ABC_phnC Location: 38305-39019 bp Feature: domain Description: ABC_phnC Location: 38305-39019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: SCXA01000035.1 (61809 bp)
Overview 1 RT 1: 27419-29571 bp Neighborhood of RT #1 [27419, 30104] HipB RVT-UG17 Feature: gene Location: 27419-27700 bp Feature: domain Description: HipB Location: 27440-27674 bp Feature: domain Description: HipB Location: 27440-27674 bp Feature: gene Location: 27786-28211 bp Feature: gene Location: 28740-30104 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28968-29571 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28968-29571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17