myRT

myRT report for GCA_004350025.1_ASM435002v1

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Seq: SCXD01000018.1 (138531 bp)
Overview 1 RT 1: 71601-81898 bp Neighborhood of RT #1 [71601, 81909] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71601-73454 bp Feature: domain Description: PRK05658 Location: 71613-73452 bp Feature: domain Description: PRK05658 Location: 71 61 3-73452 bp Feature: gene Location: 73561-77298 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73669-74326 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73669-74326 bp Feature: domain Description: PRK09776 Location: 74539-75010 bp Feature: domain Description: PRK09776 Location: 74539-7501 0 bp Feature: domain Description: PAS Location: 75067-75592 bp Feature: domain Description: PAS Location: 75067-75592 bp Feature: domain Description: PRK10060 Location: 75601-77248 bp Feature: domain Description: PRK1 0060 Location: 75601 -77248 bp Feature: gene Location: 78379-80064 bp Feature: domain Description: RVT_N Location: 78436-78676 bp Feature: domain Description: RVT_N Location: 78436-78676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78724-79360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78724-79360 bp Feature: domain Description: GIIM Note: maturase Location: 79414-79645 bp Feature: domain Description: GIIM Note: maturase Location: 7941 4-79645 bp Feature: domain Description: HNH Note: nucleases Location: 79897-80035 bp Feature: domain Description: HNH Note: nucleases Location: 79897-80035 bp Feature: gene Location: 80392-80529 bp Feature: gene Location: 80788-81909 bp Feature: domain Description: COG3177 Location: 80806-81898 bp Feature: domain Description: COG31 77 Location: 80806-81 898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: SCXD01000016.1 (140202 bp)
Overview 1 RT 1: 85853-91259 bp Neighborhood of RT #1 [85853, 91264] PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 85853-86527 bp Feature: domain Description: PRK00024 Location: 85856-86525 bp Feature: domain Description: PRK0002 4 Location: 85856-8652 5 bp Feature: gene Location: 87345-87473 bp Feature: gene Location: 87699-89381 bp Feature: domain Description: RVT_N Location: 87708-87951 bp Feature: domain Description: RVT_N Location: 87708-87951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87999-88650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87999-88650 bp Feature: domain Description: GIIM Note: maturase Location: 88728-88956 bp Feature: domain Description: GIIM Note: maturase Location: 8872 8-88956 bp Feature: domain Description: HNHc Note: nucleases Location: 89184-89340 bp Feature: domain Description: HNHc Note: nucleases Location: 89184-89340 bp Feature: gene Location: 89593-90801 bp Feature: domain Description: PRK05579 Location: 89599-90793 bp Feature: domain Description: PRK05579 Location: 89599-90793 bp Feature: gene Location: 90809-91264 bp Feature: domain Description: dut Location: 90815-91259 bp Feature: domain Description: dut Location: 90815-912 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)

Seq: SCXD01000026.1 (100289 bp)
Overview 1 RT 1: 82061-89208 bp Neighborhood of RT #1 [82061, 89372] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 82061-84463 bp Feature: domain Description: STN Location: 82181-82334 bp Feature: domain Description: STN Location: 82181-823 3 4 bp Feature: domain Description: TonB-siderophor Location: 82442-84401 bp Feature: domain Description: TonB-siderophor Location: 82442-84401 bp Feature: gene Location: 84624-85460 bp Feature: domain Description: YHI9 Location: 84636-85452 bp Feature: domain Description: YHI9 Location: 8463 6-85452 bp Feature: gene Location: 85644-86990 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 85893-86679 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 85893 -86679 bp Feature: gene Location: 87489-88757 bp Feature: domain Description: PRK06333 Location: 87495-88752 bp Feature: domain Description: PRK063 3 3 Location: 87495-88752 bp Feature: gene Location: 88866-89372 bp Feature: domain Description: HxlR Location: 88890-89208 bp Feature: domain Description: HxlR Location: 88890-89208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: SCXD01000052.1 (42983 bp)
Overview 1 RT 1: 3966-8050 bp Neighborhood of RT #1 [3966, 8050] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 3966-4793 bp Feature: domain Description: ABC_phnC Location: 3996-4710 bp Feature: domain Description: ABC_phnC Location: 3996-4 710 bp Feature: gene Location: 5136-5507 bp Feature: domain Description: DUF772 Location: 5286-5418 bp Feature: domain Description: DUF772 Location: 5286-54 18 bp Feature: gene Location: 5871-7139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6084-6741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6084 -674 1 bp Feature: domain Description: GIIM Note: maturase Location: 6819-7041 bp Feature: domain Description: GIIM Note: maturase Location: 6819-704 1 bp Feature: gene Location: 7289-7687 bp Feature: gene Location: 7871-8050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)