myRT

myRT report for GCA_004350525.1_ASM435052v1

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Seq: SCXJ01000065.1 (38066 bp)
Overview 1 RT 1: 2-3202 bp Neighborhood of RT #1 [2, 3202] DUF772 RVT-GII GIIM Feature: gene Location: 2-634 bp Feature: domain Description: DUF772 Location: 143-338 bp Feature: domain Description: DUF772 Location: 1 43-338 bp Feature: gene Location: 1023-2291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236-1893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 236-1 893 bp Feature: domain Description: GIIM Note: maturase Location: 1971-2193 bp Feature: domain Description: GIIM Note: maturase Location: 1 971 -21 93 bp Feature: gene Location: 2441-2839 bp Feature: gene Location: 3023-3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: SCXJ01000106.1 (12233 bp)
Overview 1 RT 1: 49-3980 bp Neighborhood of RT #1 [49, 3988] RVT_N RVT-GII GIIM HNHc COG3450 PRK13360 Feature: gene Location: 49-204 bp Feature: gene Location: 321-2027 bp Feature: domain Description: RVT_N Location: 378-618 bp Feature: domain Description: RVT_N Location: 378-618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666-1302 bp Feature: domain Description: GIIM Note: maturase Location: 1356-1587 bp Feature: domain Description: GIIM Note: maturase Location: 1356-1587 bp Feature: domain Description: HNHc Note: nucleases Location: 1797-1971 bp Feature: domain Description: HNHc Note: nucleases Location: 1797-1971 bp Feature: gene Location: 2231-2593 bp Feature: domain Description: COG3450 Location: 2234-2579 bp Feature: domain Description: COG3450 Location: 2 2 34-2 579 bp Feature: gene Location: 2660-3988 bp Feature: domain Description: PRK13360 Location: 2666-3980 bp Feature: domain Description: PRK13360 Location: 2 666-3980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional)

Seq: SCXJ01000039.1 (62879 bp)
Overview 1 RT 1: 27384-29536 bp Neighborhood of RT #1 [27384, 30069] HipB RVT-UG17 Feature: gene Location: 27384-27665 bp Feature: domain Description: HipB Location: 27405-27639 bp Feature: domain Description: HipB Location: 27405-2763 9 bp Feature: gene Location: 27751-28176 bp Feature: gene Location: 28705-30069 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28933-29536 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2893 3 -2953 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: SCXJ01000004.1 (188944 bp)
Overview 1 RT 1: 149842-158102 bp Neighborhood of RT #1 [149842, 158116] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 Feature: gene Location: 149842-151056 bp Feature: domain Description: PRK10770 Location: 149854-151048 bp Feature: domain Description: PRK10770 Location: 14 9854 -15104 8 bp Feature: gene Location: 151115-154000 bp Feature: domain Description: LptD Location: 151406-153986 bp Feature: domain Description: LptD Location: 1514 06-153986 bp Feature: gene Location: 154044-155750 bp Feature: domain Description: RVT_N Location: 154101-154341 bp Feature: domain Description: RVT_N Location: 154 101-154 34 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154389-155022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 389-155022 bp Feature: domain Description: GIIM Note: maturase Location: 155076-155310 bp Feature: domain Description: GIIM Note: maturase Location: 155076-155310 bp Feature: domain Description: HNH Note: nucleases Location: 155562-155694 bp Feature: domain Description: HNH Note: nucleases Location: 155562-155694 bp Feature: gene Location: 155867-156022 bp Feature: gene Location: 157100-158116 bp Feature: domain Description: COG3178 Location: 157103-158102 bp Feature: domain Description: COG3178 Location: 157103-158102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )