myRT

myRT report for GCA_004352605.1_ASM435260v1

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Seq: SGDH01002236.1 (734 bp)
Overview 1 RT 1: 1-727 bp Neighborhood of RT #1 [1, 732] RVT_N RVT-GII Feature: gene Location: 1-732 bp Feature: domain Description: RVT_N Location: 13-256 bp Feature: domain Description: RVT_N Location: 1 3-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 -727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: SGDH01000008.1 (5695 bp)
Overview 1 RT 1: 2-4709 bp Neighborhood of RT #1 [2, 4709] LptD RVT_N RVT-GII YkfC HNH Feature: gene Location: 2-1888 bp Feature: domain Description: LptD Location: 197-1889 bp Feature: domain Description: LptD Location: 197-1889 bp Feature: gene Location: 2021-3733 bp Feature: domain Description: RVT_N Location: 2078-2321 bp Feature: domain Description: RVT_N Location: 2 078-2 32 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2366-3002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 366-3002 bp Feature: domain Description: YkfC Location: 3212-3362 bp Feature: domain Description: YkfC Location: 32 12 -3362 bp Feature: domain Description: HNH Note: nucleases Location: 3539-3677 bp Feature: domain Description: HNH Note: nucleases Location: 3539-3677 bp Feature: gene Location: 4156-4425 bp Feature: gene Location: 4575-4709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: SGDH01000091.1 (2990 bp)
Overview 1 RT 1: 1-2988 bp Neighborhood of RT #1 [1, 2987] RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 1-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-109 bp Feature: domain Description: GIIM Note: maturase Location: 163-394 bp Feature: domain Description: GIIM Note: maturase Location: 163 -3 94 bp Feature: domain Description: HNH Note: nucleases Location: 646-784 bp Feature: domain Description: HNH Note: nucleases Location: 646-784 bp Feature: gene Location: 1537-2658 bp Feature: domain Description: COG3177 Location: 1555-2647 bp Feature: domain Description: COG3 177 Location: 1555-2647 bp Feature: gene Location: 2751-2987 bp Feature: domain Description: NERD Location: 2850-2988 bp Feature: domain Description: NERD Location: 2850-2988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein ), NERD (pfam08378)