myRT

myRT report for GCA_004353905.1_ASM435390v1

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Seq: SMOD01000042.1 (67102 bp)
Overview 1 RT 1: 32669-37881 bp 2 RT 2: 40466-43853 bp Neighborhood of RT #1 [32669, 38054] Fer2_4 soxA RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C HTH_28 Neighborhood of RT #2 [40466, 43870] TnpB_IS66 InsE RVT-GII PRK08130 YgbK Feature: gene Location: 32669-33013 bp Feature: domain Description: Fer2_4 Location: 32714-32954 bp Feature: domain Description: Fer2_4 Location: 3271 4-32954 bp Feature: gene Location: 33003-34421 bp Feature: domain Description: soxA Location: 33039-34416 bp Feature: domain Description: soxA Location: 33039-3441 6 bp Feature: gene Location: 34438-35340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34552-34831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34552-34831 bp Feature: domain Description: GIIM Note: maturase Location: 34915-35128 bp Feature: domain Description: GIIM Note: maturase Location: 3491 5-351 28 bp Feature: gene Location: 35286-36896 bp Feature: domain Description: LZ_Tnp_IS66 Location: 35454-35661 bp Feature: domain Description: LZ_Tnp_IS66 Location: 35454-35661 bp Feature: domain Description: zf-IS66 Location: 35682-35814 bp Feature: domain Description: zf-IS66 Location: 35682-3581 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35859-36714 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35859-3671 4 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 36735-36846 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 36735-36846 bp Feature: gene Location: 37584-38054 bp Feature: domain Description: HTH_28 Location: 37731-37881 bp Feature: domain Description: HTH_28 Location: 37731 -37881 bp Feature: gene Location: 40466-40675 bp Feature: domain Description: TnpB_IS66 Location: 40493-40670 bp Feature: domain Description: TnpB_IS66 Location: 40493-40670 bp Feature: gene Location: 40672-41070 bp Feature: domain Description: InsE Location: 40711-40897 bp Feature: domain Description: InsE Location: 4071 1 -40897 bp Feature: gene Location: 41150-41560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41252-41507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 252-41 507 bp Feature: gene Location: 41892-42554 bp Feature: domain Description: PRK08130 Location: 41925-42552 bp Feature: domain Description: PRK081 30 Location: 41 925-42552 bp Feature: gene Location: 42551-43870 bp Feature: domain Description: YgbK Location: 42581-43853 bp Feature: domain Description: YgbK Location: 42581 -43853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fer2_4 (pfam13510), soxA (TIGR01372), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), HTH_28 (pfam13518), TnpB_IS66 (pfam05717)
InsE (COG2963), PRK08130 (putative aldolase; Validated), YgbK (COG3395)

Seq: SMOD01000073.1 (22105 bp)
Overview 1 RT 1: 12512-17248 bp Neighborhood of RT #1 [12512, 17346] rubredoxin RVT-Retrons Abi_C Feature: gene Location: 12512-13321 bp Feature: gene Location: 13305-13895 bp Feature: domain Description: rubredoxin Location: 13455-13551 bp Feature: domain Description: rubredoxin Location: 13455-13551 bp Feature: gene Location: 13980-15644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14040-14682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14040-14682 bp Feature: gene Location: 15953-16138 bp Feature: gene Location: 16366-17346 bp Feature: domain Description: Abi_C Location: 17062-17248 bp Feature: domain Description: Abi_C Location: 17062 -172 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rubredoxin (cd00730), RVT-Retrons, Abi_C (pfam14355)

Seq: SMOD01000078.1 (19037 bp)
Overview 1 RT 1: 3-3643 bp Neighborhood of RT #1 [3, 3643] COG3547 YkfC RVT-GII Rve Feature: gene Location: 3-305 bp Feature: gene Location: 585-1715 bp Feature: domain Description: COG3547 Location: 714-1476 bp Feature: domain Description: COG3 547 Location: 714-1476 bp Feature: gene Location: 1839-2363 bp Feature: domain Description: YkfC Location: 1848-1974 bp Feature: domain Description: YkfC Location: 1848-1974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2025-2349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2025-23 49 bp Feature: gene Location: 2992-3288 bp Feature: domain Description: Rve Location: 3031-3250 bp Feature: domain Description: Rve Location: 3 03 1-3 250 bp Feature: gene Location: 3386-3643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), YkfC (COG3344), RVT-GII, Rve (COG3316)