myRT

myRT report for GCA_004359425.1_ASM435942v1

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Seq: PTEU01000002.1 (1872321 bp)
Overview 1 RT 1: 1011657-1016573 bp Neighborhood of RT #1 [1011657, 1016626] PRK13289 RVT-Retrons PRK11014 Feature: gene Location: 1011657-1011917 bp Feature: gene Location: 1012114-1013313 bp Feature: domain Description: PRK13289 Location: 1012117-1013308 bp Feature: domain Description: PRK1 3289 Location: 1 01 21 1 7-1 01 3308 bp Feature: gene Location: 1013497-1014477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1013749-1014268 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 3749-1 01 4268 bp Feature: gene Location: 1015346-1015837 bp Feature: gene Location: 1016171-1016626 bp Feature: domain Description: PRK11014 Location: 1016174-1016573 bp Feature: domain Description: PRK1 1 01 4 Location: 1 01 61 74-1 01 6573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13289 (NO-inducible flavohemoprotein), RVT-Retrons, PRK11014 (HTH-type transcriptional repressor NsrR)

Seq: PTEU01000001.1 (2207822 bp)
Overview 1 RT 1: 34844-42385 bp 2 RT 2: 173453-176913 bp 3 RT 3: 491469-494824 bp 4 RT 4: 994668-1001670 bp Neighborhood of RT #1 [34844, 42385] BetT COG1669 KAP_NTPase FGE-sulfatase RVT-DGRs Avd_like Neighborhood of RT #2 [173453, 176951] 2CSK_N BaeS RVT-Retrons SHOCT PspC DUF4440 Neighborhood of RT #3 [491469, 494824] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Cas_Cas1 Cas2_I_II_III Neighborhood of RT #4 [994668, 1002203] XerC YoaR DUF924 RVT-Retrons HEAT HEAT Feature: gene Location: 34844-36802 bp Feature: domain Description: BetT Location: 34856-36335 bp Feature: domain Description: BetT Location: 34856-36335 bp Feature: domain Description: COG1669 Location: 36518-36791 bp Feature: domain Description: COG1669 Location: 36518-36791 bp Feature: gene Location: 36989-40438 bp Feature: domain Description: KAP_NTPase Location: 37157-38150 bp Feature: domain Description: KAP_NTPase Location: 37157-38150 bp Feature: domain Description: FGE-sulfatase Location: 39572-40421 bp Feature: domain Description: FGE-sulfatase Location: 39572 -4042 1 bp Feature: gene Location: 40497-41564 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40707-41346 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40707-41346 bp Feature: gene Location: 41561-41890 bp Feature: domain Description: Avd_like Location: 41582-41885 bp Feature: domain Description: Avd_like Location: 41582 -41885 bp Feature: gene Location: 42011-42385 bp Feature: gene Location: 173453-173902 bp Feature: domain Description: 2CSK_N Location: 173477-173873 bp Feature: domain Description: 2 CSK_N Location: 173477-173873 bp Feature: gene Location: 173908-174426 bp Feature: domain Description: BaeS Location: 173911-174421 bp Feature: domain Description: BaeS Location: 173911-17442 1 bp Feature: gene Location: 174673-175965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175099-175732 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175099-175732 bp Feature: gene Location: 176086-176445 bp Feature: domain Description: SHOCT Location: 176107-176182 bp Feature: domain Description: SHOCT Location: 176107-176182 bp Feature: domain Description: PspC Location: 176242-176407 bp Feature: domain Description: PspC Location: 1762 42 -176407 bp Feature: gene Location: 176460-176951 bp Feature: domain Description: DUF4440 Location: 176580-176913 bp Feature: domain Description: DUF4440 Location: 176580-176913 bp Feature: gene Location: 491469-491753 bp Feature: domain Description: Cas2_I_II_III Location: 491487-491700 bp Feature: domain Description: Cas2 _I_II_III Location: 491487-491700 bp Feature: gene Location: 491775-492542 bp Feature: domain Description: Cas1_I-II-III Location: 491781-492501 bp Feature: domain Description: Cas1_I-II-III Location: 491781-492 501 bp Feature: gene Location: 492582-493952 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 492816-493437 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 492 816-493437 bp Feature: domain Description: Cas_Cas1 Location: 493749-493950 bp Feature: domain Description: Cas_Cas1 Location: 493749-493950 bp Feature: gene Location: 494027-494311 bp Feature: domain Description: Cas2_I_II_III Location: 494042-494240 bp Feature: domain Description: Cas2 _I_II_III Location: 494042 -4942 40 bp Feature: gene Location: 494315-494824 bp Feature: gene Location: 994668-996644 bp Feature: domain Description: XerC Location: 994725-995184 bp Feature: domain Description: XerC Location: 99472 5-995184 bp Feature: domain Description: YoaR Location: 995430-995889 bp Feature: domain Description: YoaR Location: 995430-995889 bp Feature: gene Location: 996672-997208 bp Feature: domain Description: DUF924 Location: 996687-997197 bp Feature: domain Description: DUF92 4 Location: 996687-997197 bp Feature: gene Location: 997214-999118 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 997772-998393 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 997772 -998393 bp Feature: gene Location: 999420-1001111 bp Feature: gene Location: 1001118-1002203 bp Feature: domain Description: HEAT Location: 1001136-1001292 bp Feature: domain Description: HEAT Location: 1001136-10012 92 bp Feature: domain Description: HEAT Location: 1001487-1001670 bp Feature: domain Description: HEAT Location: 1001487-1001670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetT (COG1292), COG1669 (Predicted nucleotidyltransferase ), KAP_NTPase (pfam07693), FGE-sulfatase (pfam03781), RVT-DGRs, Avd_like (cd16376), 2CSK_N (pfam08521), BaeS (COG0642), RVT-Retrons, SHOCT (pfam09851)
PspC (pfam04024), DUF4440 (pfam14534), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, Cas_Cas1 (pfam01867), XerC (COG4973), YoaR (COG2720), DUF924 (pfam06041), HEAT (sd00044)