myRT

myRT report for GCA_004361815.1_ASM436181v1

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Seq: SNWA01000004.1 (380914 bp)
Overview 1 RT 1: 288654-293182 bp Neighborhood of RT #1 [288654, 293199] ParE PhdYeFM_antitox RVT-GII Glyco_hydro_10 Feature: gene Location: 288654-288983 bp Feature: domain Description: ParE Location: 288657-288957 bp Feature: domain Description: ParE Location: 288657-288957 bp Feature: gene Location: 288980-289246 bp Feature: domain Description: PhdYeFM_antitox Location: 288998-289202 bp Feature: domain Description: PhdYeFM_antitox Location: 288998-289202 bp Feature: gene Location: 290257-291531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290485-291175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290485-291 1 75 bp Feature: gene Location: 291584-291955 bp Feature: gene Location: 292015-293199 bp Feature: domain Description: Glyco_hydro_10 Location: 292168-293182 bp Feature: domain Description: Glyco_hydro_1 0 Location: 2921 68-2931 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), PhdYeFM_antitox (pfam02604), RVT-GII, Glyco_hydro_10 (pfam00331)

Seq: SNWA01000002.1 (3414201 bp)
Overview 1 RT 1: 623182-627710 bp 2 RT 2: 923050-927334 bp 3 RT 3: 1284116-1292436 bp 4 RT 4: 1596838-1602157 bp 5 RT 5: 2253268-2262922 bp 6 RT 6: 2492982-2498811 bp Neighborhood of RT #1 [623182, 627763] InsE RVT-GII GIIM PHA02517 COG3547 Neighborhood of RT #2 [923050, 927354] RVT-GII Tra8 PRK10082 Neighborhood of RT #3 [1284116, 1292465] RVT-GII PHA02517 HTH_Tnp_1 RVT-GII RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #4 [1596838, 1602157] Alpha-E COG2308 RVT-GII GIIM RVT-GII HU_like Neighborhood of RT #5 [2253268, 2262930] COG3547 RVT-GII PinE Zn_ribbon_recom DUF5372 RVT-GII GIIM RVT-GII GIIM TAT_Cys_rich Neighborhood of RT #6 [2492982, 2498897] YciW HTH_XRE MLTR_LBD RVT_N RVT-GII GIIM TrkA 2a38 Feature: gene Location: 623182-623475 bp Feature: gene Location: 623686-623967 bp Feature: domain Description: InsE Location: 623704-623956 bp Feature: domain Description: InsE Location: 62 3704-62 3956 bp Feature: gene Location: 624470-625720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624674-625334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 4674-62 5334 bp Feature: domain Description: GIIM Note: maturase Location: 625415-625646 bp Feature: domain Description: GIIM Note: maturase Location: 62 5415-62 5646 bp Feature: gene Location: 625952-626635 bp Feature: domain Description: PHA02517 Location: 625961-626504 bp Feature: domain Description: PHA02 517 Location: 62 5961-62 6504 bp Feature: gene Location: 626714-627763 bp Feature: domain Description: COG3547 Location: 626735-627710 bp Feature: domain Description: COG3547 Location: 62 6735-62 7710 bp Feature: gene Location: 923050-923346 bp Feature: gene Location: 923438-923773 bp Feature: gene Location: 924036-925310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924264-924954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 42 64-92 4954 bp Feature: gene Location: 925994-927016 bp Feature: domain Description: Tra8 Location: 926009-926987 bp Feature: domain Description: Tra8 Location: 92 6009-92 6987 bp Feature: gene Location: 927025-927354 bp Feature: domain Description: PRK10082 Location: 927046-927334 bp Feature: domain Description: PRK10082 Location: 92 7046-92 7334 bp Feature: gene Location: 1284116-1284247 bp Feature: gene Location: 1284500-1284940 bp Feature: gene Location: 1285111-1285857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1285114-1285501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 85114-12 85501 bp Feature: gene Location: 1285981-1286880 bp Feature: domain Description: PHA02517 Location: 1286206-1286863 bp Feature: domain Description: PHA02 517 Location: 12 862 06-12 86863 bp Feature: gene Location: 1286877-1287266 bp Feature: domain Description: HTH_Tnp_1 Location: 1286973-1287171 bp Feature: domain Description: HTH_Tnp_1 Location: 12 86973-12 87171 bp Feature: gene Location: 1287250-1287789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287478-1287706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 87478-12 87706 bp Feature: gene Location: 1288521-1289795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288749-1289439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 88749-12 89439 bp Feature: gene Location: 1290534-1292066 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1290660-1290879 bp Feature: domain Description: LZ_Tnp_IS66 Location: 12 90660-12 90879 bp Feature: domain Description: zf-IS66 Location: 1290900-1291026 bp Feature: domain Description: zf-IS66 Location: 12 90900-12 9102 6 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1291068-1291911 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12 91068-12 91911 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1291932-1292043 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12 91932 -12 92 043 bp Feature: gene Location: 1292130-1292465 bp Feature: domain Description: TnpB_IS66 Location: 1292148-1292436 bp Feature: domain Description: TnpB_IS66 Location: 12 92 148-12 92 436 bp Feature: gene Location: 1596838-1597788 bp Feature: domain Description: Alpha-E Location: 1596841-1597771 bp Feature: domain Description: Alpha-E Location: 1596841-1597771 bp Feature: gene Location: 1597902-1599359 bp Feature: domain Description: COG2308 Location: 1597953-1599354 bp Feature: domain Description: COG2 308 Location: 1597953-1599354 bp Feature: gene Location: 1599668-1600375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1599674-1599956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1599674-1599956 bp Feature: domain Description: GIIM Note: maturase Location: 1600016-1600214 bp Feature: domain Description: GIIM Note: maturase Location: 1600016-16002 14 bp Feature: gene Location: 1600411-1600821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600744-1600813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600744-1600813 bp Feature: gene Location: 1601325-1601774 bp Feature: domain Description: HU_like Location: 1601481-1601760 bp Feature: domain Description: HU_like Location: 1601481-1601760 bp Feature: gene Location: 1601960-1602157 bp Feature: gene Location: 2253268-2253600 bp Feature: gene Location: 2254013-2255170 bp Feature: domain Description: COG3547 Location: 2254241-2255123 bp Feature: domain Description: COG3547 Location: 2 2 542 41-2 2 5512 3 bp Feature: gene Location: 2255559-2255861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2255808-2255856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 55808-2 2 55856 bp Feature: gene Location: 2255870-2257942 bp Feature: domain Description: PinE Location: 2255912-2256584 bp Feature: domain Description: PinE Location: 2 2 55912 -2 2 56584 bp Feature: domain Description: Zn_ribbon_recom Location: 2256866-2257043 bp Feature: domain Description: Zn_ribbon_recom Location: 2 2 56866-2 2 57043 bp Feature: gene Location: 2258079-2258354 bp Feature: gene Location: 2258464-2259210 bp Feature: domain Description: DUF5372 Location: 2258941-2259172 bp Feature: domain Description: DUF5372 Location: 2 2 58941-2 2 59172 bp Feature: gene Location: 2258814-2259773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2258820-2259417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 5882 0-2 2 59417 bp Feature: domain Description: GIIM Note: maturase Location: 2259486-2259702 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 59486-2 2 59702 bp Feature: gene Location: 2260355-2261659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260640-2261279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 60640-2 2 612 79 bp Feature: domain Description: GIIM Note: maturase Location: 2261354-2261573 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 61354-2 2 61573 bp Feature: gene Location: 2261965-2262120 bp Feature: gene Location: 2262493-2262930 bp Feature: domain Description: TAT_Cys_rich Location: 2262496-2262922 bp Feature: domain Description: TAT_Cys_rich Location: 2 2 62 496-2 2 62 92 2 bp Feature: gene Location: 2492982-2493539 bp Feature: domain Description: YciW Location: 2493042-2493495 bp Feature: domain Description: YciW Location: 2 493042 -2 493495 bp Feature: gene Location: 2493577-2494422 bp Feature: domain Description: HTH_XRE Location: 2493625-2493793 bp Feature: domain Description: HTH_XRE Location: 2 49362 5-2 493793 bp Feature: domain Description: MLTR_LBD Location: 2493880-2494396 bp Feature: domain Description: MLTR_LBD Location: 2 493880-2 494396 bp Feature: gene Location: 2494578-2496059 bp Feature: domain Description: RVT_N Location: 2494632-2494875 bp Feature: domain Description: RVT_N Location: 2 494632 -2 494875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2494920-2495544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 49492 0-2 495544 bp Feature: domain Description: GIIM Note: maturase Location: 2495601-2495829 bp Feature: domain Description: GIIM Note: maturase Location: 2 495601-2 49582 9 bp Feature: gene Location: 2496883-2497542 bp Feature: domain Description: TrkA Location: 2496898-2497537 bp Feature: domain Description: TrkA Location: 2 496898-2 497537 bp Feature: gene Location: 2497611-2498897 bp Feature: domain Description: 2a38 Location: 2497659-2498811 bp Feature: domain Description: 2 a38 Location: 2 497659-2 498811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), Tra8 (COG2826), PRK10082 (hypochlorite stress DNA-binding transcriptional regulator HypT), HTH_Tnp_1 (pfam01527), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), Alpha-E (pfam04168), COG2308 (Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily ), HU_like (cd13834), PinE (COG1961), Zn_ribbon_recom (pfam13408), DUF5372 (pfam17342), TAT_Cys_rich (TIGR04401)
YciW (COG2128), HTH_XRE (smart00530), MLTR_LBD (pfam17765), RVT_N (pfam13655), TrkA (COG0569), 2a38 (TIGR00933)

Seq: SNWA01000003.1 (729489 bp)
Overview 1 RT 1: 119048-123687 bp Neighborhood of RT #1 [119048, 123687] PRK11161 RVT-GII nifA Feature: gene Location: 119048-119836 bp Feature: domain Description: PRK11161 Location: 119138-119822 bp Feature: domain Description: PRK11161 Location: 11913 8-119822 bp Feature: gene Location: 120142-120408 bp Feature: gene Location: 120821-121087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120848-121022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120848-121022 bp Feature: gene Location: 121233-123128 bp Feature: domain Description: nifA Location: 121452-123126 bp Feature: domain Description: nifA Location: 121452-123 126 bp Feature: gene Location: 123295-123687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11161 (fumarate/nitrate reduction transcriptional regulator Fnr), RVT-GII, nifA (TIGR01817)

Seq: SNWA01000001.1 (4677917 bp)
Overview 1 RT 1: 466063-470620 bp 2 RT 2: 720760-725374 bp 3 RT 3: 3292001-3296754 bp Neighborhood of RT #1 [466063, 470703] RVT-GII Methyltransf_11 DUF772 IS5 Neighborhood of RT #2 [720760, 725388] GIIM HTH_32 DDE_3 RVT-GII rmlC Neighborhood of RT #3 [3292001, 3296867] COG4584 IstB_IS21 RVT-GII GIIM PHA02517 HTH_Tnp_1 Feature: gene Location: 466063-466245 bp Feature: gene Location: 466416-467006 bp Feature: gene Location: 467059-467685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467314-467611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 67314 -4 67611 bp Feature: gene Location: 468095-469129 bp Feature: domain Description: Methyltransf_11 Location: 468503-468842 bp Feature: domain Description: Methyltransf_11 Location: 4 68503-4 6884 2 bp Feature: gene Location: 469381-470703 bp Feature: domain Description: DUF772 Location: 469537-469759 bp Feature: domain Description: DUF772 Location: 4 69537-4 69759 bp Feature: domain Description: IS5 Location: 470107-470620 bp Feature: domain Description: IS5 Location: 4 70107-4 70620 bp Feature: gene Location: 720760-721032 bp Feature: domain Description: GIIM Note: maturase Location: 720769-720949 bp Feature: domain Description: GIIM Note: maturase Location: 720769-72094 9 bp Feature: gene Location: 721129-722268 bp Feature: domain Description: HTH_32 Location: 721318-721579 bp Feature: domain Description: HTH_32 Location: 721318-721579 bp Feature: domain Description: DDE_3 Location: 721741-722185 bp Feature: domain Description: DDE_3 Location: 72174 1-722185 bp Feature: gene Location: 722318-723253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722522-723179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722522-723179 bp Feature: gene Location: 723255-723404 bp Feature: gene Location: 724837-725388 bp Feature: domain Description: rmlC Location: 724852-725374 bp Feature: domain Description: rmlC Location: 724 852-725374 bp Feature: gene Location: 3292001-3293533 bp Feature: domain Description: COG4584 Location: 3292031-3292772 bp Feature: domain Description: COG4 584 Location: 3292031-3292772 bp Feature: gene Location: 3293526-3294326 bp Feature: domain Description: IstB_IS21 Location: 3293682-3294210 bp Feature: domain Description: IstB_IS21 Location: 3293682-3294 210 bp Feature: gene Location: 3294561-3295343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294567-3295164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294 567-3295164 bp Feature: domain Description: GIIM Note: maturase Location: 3295233-3295341 bp Feature: domain Description: GIIM Note: maturase Location: 3295233-329534 1 bp Feature: gene Location: 3295558-3296457 bp Feature: domain Description: PHA02517 Location: 3295783-3296440 bp Feature: domain Description: PHA02517 Location: 3295783-32964 4 0 bp Feature: gene Location: 3296454-3296867 bp Feature: domain Description: HTH_Tnp_1 Location: 3296574-3296754 bp Feature: domain Description: HTH_Tnp_1 Location: 3296574 -3296754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Methyltransf_11 (pfam08241), DUF772 (pfam05598), IS5 (COG3039), GIIM (pfam08388), HTH_32 (pfam13565), DDE_3 (pfam13358), rmlC (TIGR01221), COG4584 (Transposase ), IstB_IS21 (pfam01695)
PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)