myRT

myRT report for GCA_004362045.1_ASM436204v1

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Seq: SNWX01000062.1 (3151 bp)
Overview 1 RT 1: 997-3138 bp Neighborhood of RT #1 [997, 3149] RelE PhdYeFM_antitox RVT-GII GIIM group_II_RT_mat Feature: gene Location: 997-1299 bp Feature: domain Description: RelE Location: 1003-1252 bp Feature: domain Description: RelE Location: 1 003-1 252 bp Feature: gene Location: 1320-1634 bp Feature: domain Description: PhdYeFM_antitox Location: 1371-1563 bp Feature: domain Description: PhdYeFM_antitox Location: 1 371 -1 563 bp Feature: gene Location: 1886-2773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919-2399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 9-2399 bp Feature: domain Description: GIIM Note: maturase Location: 2483-2684 bp Feature: domain Description: GIIM Note: maturase Location: 2483-2684 bp Feature: gene Location: 2952-3149 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3009-3138 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3009-31 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), PhdYeFM_antitox (pfam02604), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: SNWX01000006.1 (138058 bp)
Overview 1 RT 1: 131778-135654 bp Neighborhood of RT #1 [131778, 135671] pfam03781 Avd_like RVT-DGRs ZliS Feature: gene Location: 131778-132806 bp Feature: domain Description: pfam03781 Location: 132024-132363 bp Feature: domain Description: pfam03781 Location: 132 02 4-132 363 bp Feature: gene Location: 132874-133215 bp Feature: domain Description: Avd_like Location: 132892-133198 bp Feature: domain Description: Avd_like Location: 132 892 -133198 bp Feature: gene Location: 133760-134716 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 133817-134468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 133817-134468 bp Feature: gene Location: 134777-135151 bp Feature: gene Location: 135153-135671 bp Feature: domain Description: ZliS Location: 135162-135654 bp Feature: domain Description: ZliS Location: 135162 -135654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, ZliS (COG3926)

Seq: SNWX01000032.1 (37047 bp)
Overview 1 RT 1: 676-4340 bp Neighborhood of RT #1 [676, 4342] SLT RVT-DGRs Avd_like PHA00653 Feature: gene Location: 676-1128 bp Feature: domain Description: SLT Location: 703-1090 bp Feature: domain Description: SLT Location: 703 -1090 bp Feature: gene Location: 1133-1372 bp Feature: gene Location: 1456-2577 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1675-2326 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1675-23 26 bp Feature: gene Location: 2938-3231 bp Feature: domain Description: Avd_like Location: 2941-3226 bp Feature: domain Description: Avd_like Location: 2941-3 226 bp Feature: gene Location: 3311-4342 bp Feature: domain Description: PHA00653 Location: 3467-4340 bp Feature: domain Description: PHA00653 Location: 3 467-43 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLT (pfam01464), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: SNWX01000004.1 (196127 bp)
Overview 1 RT 1: 64923-71242 bp Neighborhood of RT #1 [64923, 71253] DUF4868 RVT-UG5 WcaG Smc Smc Feature: gene Location: 64923-65450 bp Feature: gene Location: 65452-66390 bp Feature: domain Description: DUF4868 Location: 65815-66349 bp Feature: domain Description: DUF4 868 Location: 65815-6634 9 bp Feature: gene Location: 66495-69677 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 66969-67461 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 66969-674 61 bp Feature: gene Location: 69867-70091 bp Feature: domain Description: WcaG Location: 69966-70086 bp Feature: domain Description: WcaG Location: 69966-70086 bp Feature: gene Location: 70237-71253 bp Feature: domain Description: Smc Location: 70258-70501 bp Feature: domain Description: Smc Location: 70258-70501 bp Feature: domain Description: Smc Location: 70582-71242 bp Feature: domain Description: Smc Location: 70582-7124 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4868 (pfam16162), RVT-UG5, WcaG (COG0451), Smc (COG1196)

Seq: SNWX01000009.1 (98587 bp)
Overview 1 RT 1: 89784-94444 bp Neighborhood of RT #1 [89784, 94449] DUF2232 rpsR RVT-GII HNHc ssb rpsF Feature: gene Location: 89784-90668 bp Feature: domain Description: DUF2232 Location: 89832-90630 bp Feature: domain Description: DUF2232 Location: 89832-90630 bp Feature: gene Location: 90759-90974 bp Feature: domain Description: rpsR Location: 90771-90972 bp Feature: domain Description: rpsR Location: 90771-90972 bp Feature: gene Location: 91090-92934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91417-92113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91417-92113 bp Feature: domain Description: HNHc Note: nucleases Location: 92668-92806 bp Feature: domain Description: HNHc Note: nucleases Location: 92668-92806 bp Feature: gene Location: 93643-94125 bp Feature: domain Description: ssb Location: 93646-94123 bp Feature: domain Description: ssb Location: 93646-94123 bp Feature: gene Location: 94150-94449 bp Feature: domain Description: rpsF Location: 94168-94444 bp Feature: domain Description: rpsF Location: 94168-94444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2232 (pfam09991), rpsR (PRK00391), RVT-GII, HNHc (smart00507), ssb (TIGR00621), rpsF (PRK14074)

Seq: SNWX01000010.1 (95514 bp)
Overview 1 RT 1: 3-3284 bp Neighborhood of RT #1 [3, 3304] RVT-GII GIIM PRK10255 PTS-HPr Feature: gene Location: 3-1397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-951 bp Feature: domain Description: GIIM Note: maturase Location: 1002-1233 bp Feature: domain Description: GIIM Note: maturase Location: 1002-1233 bp Feature: gene Location: 1561-2991 bp Feature: domain Description: PRK10255 Location: 1573-2983 bp Feature: domain Description: PRK10255 Location: 1573-2983 bp Feature: gene Location: 3035-3304 bp Feature: domain Description: PTS-HPr Location: 3047-3284 bp Feature: domain Description: PTS-HPr Location: 3047-3284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10255 (PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional), PTS-HPr (pfam00381)

Seq: SNWX01000001.1 (319989 bp)
Overview 1 RT 1: 1-2591 bp Neighborhood of RT #1 [1, 2935] RVT-GII GIIM Inhibitor_G39P Feature: gene Location: 1-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-538 bp Feature: domain Description: GIIM Note: maturase Location: 589-820 bp Feature: domain Description: GIIM Note: maturase Location: 589-820 bp Feature: gene Location: 1285-2382 bp Feature: gene Location: 2375-2935 bp Feature: domain Description: Inhibitor_G39P Location: 2378-2591 bp Feature: domain Description: Inhibitor_G39P Location: 237 8-2591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Inhibitor_G39P (pfam11417)

Seq: SNWX01000007.1 (115747 bp)
Overview 1 RT 1: 112832-115580 bp Neighborhood of RT #1 [112832, 115744] MadL CaiB RVT-GII GIIM Feature: gene Location: 112832-113188 bp Feature: domain Description: MadL Location: 112835-113183 bp Feature: domain Description: MadL Location: 1128 35-11318 3 bp Feature: gene Location: 113247-114452 bp Feature: domain Description: CaiB Location: 113253-114447 bp Feature: domain Description: CaiB Location: 113253-114447 bp Feature: gene Location: 114764-115744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114770-115298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114770-115298 bp Feature: domain Description: GIIM Note: maturase Location: 115349-115580 bp Feature: domain Description: GIIM Note: maturase Location: 115349-11558 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MadL (pfam03817), CaiB (COG1804), RVT-GII, GIIM (pfam08388)