myRT

myRT report for GCA_004364435.1_ASM436443v1

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Seq: SOCT01000001.1 (1105935 bp)
Overview 1 RT 1: 1-3034 bp Neighborhood of RT #1 [1, 3102] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C COG4584 IstB_IS21_ATP IstB_IS21 Feature: gene Location: 1-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-304 bp Feature: domain Description: LZ_Tnp_IS66 Location: 316-493 bp Feature: domain Description: LZ_Tnp_IS66 Location: 31 6-493 bp Feature: domain Description: zf-IS66 Location: 526-646 bp Feature: domain Description: zf-IS66 Location: 526-646 bp Feature: domain Description: DDE_Tnp_IS66 Location: 691-1546 bp Feature: domain Description: DDE_Tnp_IS66 Location: 691 -1 546 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1567-1681 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 567-1 681 bp Feature: gene Location: 1604-2326 bp Feature: domain Description: COG4584 Location: 1763-2216 bp Feature: domain Description: COG4584 Location: 1 763-221 6 bp Feature: gene Location: 2347-3102 bp Feature: domain Description: IstB_IS21_ATP Location: 2419-2503 bp Feature: domain Description: IstB_IS21 _ATP Location: 241 9-2503 bp Feature: domain Description: IstB_IS21 Location: 2509-3034 bp Feature: domain Description: IstB_IS21 Location: 2509-3034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695)

Seq: SOCT01000008.1 (177046 bp)
Overview 1 RT 1: 116965-119918 bp Neighborhood of RT #1 [116965, 119953] TnpB_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C GtrA Feature: gene Location: 116965-117426 bp Feature: gene Location: 117658-118020 bp Feature: domain Description: TnpB_IS66 Location: 117688-117841 bp Feature: domain Description: TnpB_IS66 Location: 117688-117841 bp Feature: gene Location: 118373-118711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118577-118709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118577-118709 bp Feature: gene Location: 118698-119333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 118713-119184 bp Feature: domain Description: DDE_Tnp_IS66 Location: 118713-119184 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 119205-119316 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1192 05-119316 bp Feature: gene Location: 119546-119953 bp Feature: domain Description: GtrA Location: 119594-119918 bp Feature: domain Description: GtrA Location: 119594-119918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), GtrA (pfam04138)

Seq: SOCT01000009.1 (160909 bp)
Overview 1 RT 1: 93433-95990 bp Neighborhood of RT #1 [93433, 96025] TnpB_IS66 RVT-GII InsE PHA02517 Feature: gene Location: 93433-93606 bp Feature: gene Location: 94006-94359 bp Feature: domain Description: TnpB_IS66 Location: 94081-94234 bp Feature: domain Description: TnpB_IS66 Location: 94081-9423 4 bp Feature: gene Location: 94766-95035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94970-95030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94970-9503 0 bp Feature: gene Location: 95095-95403 bp Feature: domain Description: InsE Location: 95098-95389 bp Feature: domain Description: InsE Location: 95098-953 89 bp Feature: gene Location: 95699-96025 bp Feature: domain Description: PHA02517 Location: 95717-95990 bp Feature: domain Description: PHA02517 Location: 95717-95990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: SOCT01000003.1 (597242 bp)
Overview 1 RT 1: 70477-73913 bp Neighborhood of RT #1 [70477, 74032] TolC LexA RVT-GII TnpB_IS66 Feature: gene Location: 70477-71925 bp Feature: domain Description: TolC Location: 70534-71872 bp Feature: domain Description: TolC Location: 70534 -71872 bp Feature: gene Location: 72027-72476 bp Feature: domain Description: LexA Location: 72075-72444 bp Feature: domain Description: LexA Location: 72075-724 4 4 bp Feature: gene Location: 72829-73257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72862-73192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72862-73192 bp Feature: gene Location: 73318-73581 bp Feature: gene Location: 73721-74032 bp Feature: domain Description: TnpB_IS66 Location: 73751-73913 bp Feature: domain Description: TnpB_IS66 Location: 73751-73913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TolC (COG1538), LexA (COG1974), RVT-GII, TnpB_IS66 (pfam05717)

Seq: SOCT01000002.1 (835026 bp)
Overview 1 RT 1: 198848-200955 bp Neighborhood of RT #1 [198848, 200955] group_II_RT_mat RVT-GII RVT-GII GIIM Feature: gene Location: 198848-199000 bp Feature: gene Location: 199327-199470 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 199357-199459 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19935 7-19945 9 bp Feature: gene Location: 199477-199776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199525-199750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995 25 -19975 0 bp Feature: gene Location: 199776-200051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199779-200040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199779-200040 bp Feature: gene Location: 200104-200382 bp Feature: domain Description: GIIM Note: maturase Location: 200197-200380 bp Feature: domain Description: GIIM Note: maturase Location: 200197-200380 bp Feature: gene Location: 200773-200955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: SOCT01000036.1 (1854 bp)
Overview 1 RT 1: 78-1577 bp Neighborhood of RT #1 [78, 1577] RVT-GII GIIM Feature: gene Location: 78-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291-948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291-948 bp Feature: domain Description: GIIM Note: maturase Location: 1026-1248 bp Feature: domain Description: GIIM Note: maturase Location: 1026 -1248 bp Feature: gene Location: 1341-1577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)