myRT

myRT report for GCA_004365055.1_ASM436505v1

Download annotations/find similar RTs

Seq: SOBX01000002.1 (4169998 bp)
Overview 1 RT 1: 3635385-3641934 bp Neighborhood of RT #1 [3635385, 3641939] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM RVT-GII GIIM PHA02517 lysS Feature: gene Location: 3635385-3635747 bp Feature: gene Location: 3635718-3636224 bp Feature: domain Description: zf-IS66 Location: 3635721-3635805 bp Feature: domain Description: zf-IS66 Location: 3635721 -3635805 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3635874-3636171 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3635874-36361 71 bp Feature: gene Location: 3636286-3637014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3636319-3636634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363631 9-3636634 bp Feature: domain Description: GIIM Note: maturase Location: 3636709-3636928 bp Feature: domain Description: GIIM Note: maturase Location: 3636709-3636928 bp Feature: gene Location: 3637447-3637596 bp Feature: gene Location: 3637589-3638842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637802-3638459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637802-3638459 bp Feature: domain Description: GIIM Note: maturase Location: 3638537-3638759 bp Feature: domain Description: GIIM Note: maturase Location: 3638537-3638759 bp Feature: gene Location: 3639076-3639660 bp Feature: domain Description: PHA02517 Location: 3639115-3639634 bp Feature: domain Description: PHA0251 7 Location: 36391 1 5-3639634 bp Feature: gene Location: 3640425-3641939 bp Feature: domain Description: lysS Location: 3640485-3641934 bp Feature: domain Description: lysS Location: 3640485-3641 934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), lysS (PRK02983)

Seq: SOBX01000001.1 (5173532 bp)
Overview 1 RT 1: 476150-482286 bp 2 RT 2: 3389723-3394792 bp 3 RT 3: 4348317-4353695 bp 4 RT 4: 4437219-4444392 bp Neighborhood of RT #1 [476150, 482321] Zn_Tnp_IS91 Y2_Tnp Recombinase Zn_ribbon_recom RVT-GII GIIM COG3547 COG3547 COG3547 Neighborhood of RT #2 [3389723, 3394792] TIR_2 RVT-G2L RVT-G2L Neighborhood of RT #3 [4348317, 4354861] RVT-G2L4 BRR2 BRR2 Neighborhood of RT #4 [4437219, 4444520] Rhizobitoxine-FADS-like RVT-Retrons TetR_C_16 COG3547 Feature: gene Location: 476150-477178 bp Feature: domain Description: Zn_Tnp_IS91 Location: 476162-476279 bp Feature: domain Description: Zn_Tnp_IS91 Location: 476162 -4762 79 bp Feature: domain Description: Y2_Tnp Location: 476405-476963 bp Feature: domain Description: Y2 _Tnp Location: 476405-476963 bp Feature: gene Location: 477733-478884 bp Feature: domain Description: Recombinase Location: 477739-478081 bp Feature: domain Description: Recombinase Location: 477739-478081 bp Feature: domain Description: Zn_ribbon_recom Location: 478126-478330 bp Feature: domain Description: Zn_ribbon_recom Location: 47812 6-478330 bp Feature: gene Location: 478865-479413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478868-479117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478868-479117 bp Feature: domain Description: GIIM Note: maturase Location: 479168-479402 bp Feature: domain Description: GIIM Note: maturase Location: 479168-479402 bp Feature: gene Location: 479922-481268 bp Feature: domain Description: COG3547 Location: 479976-480375 bp Feature: domain Description: COG3547 Location: 479976-480375 bp Feature: domain Description: COG3547 Location: 480726-481110 bp Feature: domain Description: COG3547 Location: 48072 6-481110 bp Feature: gene Location: 481287-482321 bp Feature: domain Description: COG3547 Location: 481383-482286 bp Feature: domain Description: COG3547 Location: 481383-482 2 86 bp Feature: gene Location: 3389723-3390589 bp Feature: gene Location: 3391635-3392570 bp Feature: domain Description: TIR_2 Location: 3391662-3392043 bp Feature: domain Description: TIR_2 Location: 3391662 -3392 043 bp Feature: gene Location: 3392694-3393407 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 3392700-3393087 bp Feature: RT Description: RVT-G2 L Note: G2 L RT Location: 3392 700-3393087 bp Feature: gene Location: 3393404-3393889 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 3393626-3393833 bp Feature: RT Description: RVT-G2 L Note: G2 L RT Location: 339362 6-3393833 bp Feature: gene Location: 3393893-3394216 bp Feature: gene Location: 3394175-3394792 bp Feature: gene Location: 4348317-4348688 bp Feature: gene Location: 4349105-4349266 bp Feature: gene Location: 4349356-4350660 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 4349578-4350151 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 4349578-4350151 bp Feature: gene Location: 4350899-4351708 bp Feature: gene Location: 4351895-4354861 bp Feature: domain Description: BRR2 Location: 4352417-4353008 bp Feature: domain Description: BRR2 Location: 4352 417-4353008 bp Feature: domain Description: BRR2 Location: 4353446-4353695 bp Feature: domain Description: BRR2 Location: 4353446-4353695 bp Feature: gene Location: 4437219-4438154 bp Feature: domain Description: Rhizobitoxine-FADS-like Location: 4437321-4438113 bp Feature: domain Description: Rhizobitoxine-FADS-like Location: 443732 1-4438113 bp Feature: gene Location: 4439349-4440494 bp Feature: gene Location: 4440853-4442226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4441318-4441957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4441318-4441957 bp Feature: gene Location: 4442511-4443092 bp Feature: domain Description: TetR_C_16 Location: 4442724-4442919 bp Feature: domain Description: TetR_C_16 Location: 4442 72 4-4442 919 bp Feature: gene Location: 4443390-4444520 bp Feature: domain Description: COG3547 Location: 4443417-4444392 bp Feature: domain Description: COG3547 Location: 4443417-4444392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), TIR_2 (pfam13676), RVT-G2L, RVT-G2L4
BRR2 (COG1204), Rhizobitoxine-FADS-like (cd03510), RVT-Retrons, TetR_C_16 (pfam17920)

Seq: SOBX01000003.1 (227370 bp)
Overview 1 RT 1: 178393-187705 bp Neighborhood of RT #1 [178393, 188229] Rve Rve RVT_N RVT-GII GIIM HNHc GAF_2 sensory_box sensory_box sensory_box GAF_2 PRK11360 COG3899 Feature: gene Location: 178393-179196 bp Feature: domain Description: Rve Location: 178510-179125 bp Feature: domain Description: Rve Location: 178510-179125 bp Feature: gene Location: 179342-180061 bp Feature: domain Description: Rve Location: 179384-180005 bp Feature: domain Description: Rve Location: 1793 84-180005 bp Feature: gene Location: 180063-181811 bp Feature: domain Description: RVT_N Location: 180150-180393 bp Feature: domain Description: RVT_N Location: 180150-1803 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180438-181086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18043 8-181086 bp Feature: domain Description: GIIM Note: maturase Location: 181140-181374 bp Feature: domain Description: GIIM Note: maturase Location: 181140-1813 74 bp Feature: domain Description: HNHc Note: nucleases Location: 181608-181764 bp Feature: domain Description: HNHc Note: nucleases Location: 181608-181764 bp Feature: gene Location: 181931-185620 bp Feature: domain Description: GAF_2 Location: 182282-182717 bp Feature: domain Description: GAF_2 Location: 182282-182717 bp Feature: domain Description: sensory_box Location: 182750-183119 bp Feature: domain Description: sensory_box Location: 182750-183 119 bp Feature: domain Description: sensory_box Location: 183197-183503 bp Feature: domain Description: sensory_box Location: 183 197-183 503 bp Feature: domain Description: sensory_box Location: 184043-184400 bp Feature: domain Description: sensory_box Location: 184043 -184400 bp Feature: domain Description: GAF_2 Location: 184448-184877 bp Feature: domain Description: GAF_2 Location: 184448-184877 bp Feature: domain Description: PRK11360 Location: 184904-185612 bp Feature: domain Description: PRK113 60 Location: 184904-185612 bp Feature: gene Location: 185632-188229 bp Feature: domain Description: COG3899 Location: 185635-187705 bp Feature: domain Description: COG3 899 Location: 18563 5-187705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), GAF_2 (pfam13185), sensory_box (TIGR00229), PRK11360 (two-component system sensor histidine kinase AtoS), COG3899 (Predicted ATPase )